miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 3' -65.7 NC_005261.1 + 5985 0.69 0.280368
Target:  5'- uGCCGCGCGucuccgcuCCUCCCGCGgCgAGGGc -3'
miRNA:   3'- gCGGUGCGC--------GGGGGGCGCgGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 9971 0.66 0.43671
Target:  5'- aGCC-CGC-CCCCCCggacGCGCCUcGGc- -3'
miRNA:   3'- gCGGuGCGcGGGGGG----CGCGGAuCCuu -5'
23625 3' -65.7 NC_005261.1 + 10202 0.67 0.379227
Target:  5'- cCGaCCGCGUGCUCccagggCCCGCGCCUgcccAGGc- -3'
miRNA:   3'- -GC-GGUGCGCGGG------GGGCGCGGA----UCCuu -5'
23625 3' -65.7 NC_005261.1 + 10262 0.71 0.198367
Target:  5'- gGCCugGCGCCUUCUGC-CCUgAGGAc -3'
miRNA:   3'- gCGGugCGCGGGGGGCGcGGA-UCCUu -5'
23625 3' -65.7 NC_005261.1 + 10529 0.68 0.32704
Target:  5'- cCGCgGCGCgcucgcugucGCCCCCggCGCGCCUGccGGGc -3'
miRNA:   3'- -GCGgUGCG----------CGGGGG--GCGCGGAU--CCUu -5'
23625 3' -65.7 NC_005261.1 + 11058 0.73 0.148606
Target:  5'- gCGCCGCccagGCGCCgCCagCGCGUCUAGGGAc -3'
miRNA:   3'- -GCGGUG----CGCGG-GGg-GCGCGGAUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 11218 0.69 0.286698
Target:  5'- aCGCCGCGUgGCCCCCCGCGg------- -3'
miRNA:   3'- -GCGGUGCG-CGGGGGGCGCggauccuu -5'
23625 3' -65.7 NC_005261.1 + 11894 0.66 0.419772
Target:  5'- cCGCaCGCGCGCCCgCCGCggGCCcGGc-- -3'
miRNA:   3'- -GCG-GUGCGCGGGgGGCG--CGGaUCcuu -5'
23625 3' -65.7 NC_005261.1 + 13013 0.7 0.261452
Target:  5'- aGCCcgaGCGCGCCCCCCaGCaccacgaGCC-AGGGc -3'
miRNA:   3'- gCGG---UGCGCGGGGGG-CG-------CGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 13053 0.68 0.320034
Target:  5'- gGCCGCGCGCgCCCC-UGCC-GGGc- -3'
miRNA:   3'- gCGGUGCGCGgGGGGcGCGGaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 14759 0.68 0.334159
Target:  5'- gCGCCGCGCcgcgacagggggGCCgCCCCGCGC--AGGu- -3'
miRNA:   3'- -GCGGUGCG------------CGG-GGGGCGCGgaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 15260 0.68 0.348736
Target:  5'- gGCCGCGauCGCCCCggCgGCGCCgccGGGGc -3'
miRNA:   3'- gCGGUGC--GCGGGG--GgCGCGGa--UCCUu -5'
23625 3' -65.7 NC_005261.1 + 19537 0.68 0.320034
Target:  5'- gGCC-CGCGUCaCCgCCaGCGCCgUGGGGAg -3'
miRNA:   3'- gCGGuGCGCGG-GG-GG-CGCGG-AUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 19779 0.66 0.43671
Target:  5'- uCGCCucgaacACGCgGCCCUCCGaGCCgGGGGu -3'
miRNA:   3'- -GCGG------UGCG-CGGGGGGCgCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 20246 0.69 0.286698
Target:  5'- cCGCCGCGCGCUCCauggGCGCCga-GAAc -3'
miRNA:   3'- -GCGGUGCGCGGGGgg--CGCGGaucCUU- -5'
23625 3' -65.7 NC_005261.1 + 20790 0.67 0.36376
Target:  5'- uCGCgCACGUcgcuGCCCCgaCGCGCCUGGu-- -3'
miRNA:   3'- -GCG-GUGCG----CGGGGg-GCGCGGAUCcuu -5'
23625 3' -65.7 NC_005261.1 + 20976 0.66 0.418936
Target:  5'- cCGCgGCGCGgcgcccuaCCCCCuuagacgCGCGCCUuGGGGg -3'
miRNA:   3'- -GCGgUGCGC--------GGGGG-------GCGCGGA-UCCUu -5'
23625 3' -65.7 NC_005261.1 + 22243 0.66 0.428191
Target:  5'- cCGCCcCGC-CCCUCCGCGCCc----- -3'
miRNA:   3'- -GCGGuGCGcGGGGGGCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 22753 0.67 0.395128
Target:  5'- gGCgGCgGCGgCCCaCGCGUCUGGGGg -3'
miRNA:   3'- gCGgUG-CGCgGGGgGCGCGGAUCCUu -5'
23625 3' -65.7 NC_005261.1 + 22824 0.66 0.419772
Target:  5'- cCGCCGC-CGCCgUUgGCGCCgggcucgGGGAAg -3'
miRNA:   3'- -GCGGUGcGCGGgGGgCGCGGa------UCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.