miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 3' -65.7 NC_005261.1 + 69281 0.66 0.445324
Target:  5'- cCGCC-CGCGCCgaCCCCGgCGC--GGGGc -3'
miRNA:   3'- -GCGGuGCGCGG--GGGGC-GCGgaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 67299 0.66 0.44273
Target:  5'- cCGCCGCGCgcgcgccgccgucgGCCgCCgCCGCGCUcagccgcAGGAAc -3'
miRNA:   3'- -GCGGUGCG--------------CGG-GG-GGCGCGGa------UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 117261 0.66 0.44273
Target:  5'- uCGCCGCGCGCCucgaggacggcgagCCUgGCGCCg----- -3'
miRNA:   3'- -GCGGUGCGCGG--------------GGGgCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 102310 0.66 0.440144
Target:  5'- aGCCGCGCGCCgCggccgcggcgcgcagCCGCGCCa----- -3'
miRNA:   3'- gCGGUGCGCGGgG---------------GGCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 9971 0.66 0.43671
Target:  5'- aGCC-CGC-CCCCCCggacGCGCCUcGGc- -3'
miRNA:   3'- gCGGuGCGcGGGGGG----CGCGGAuCCuu -5'
23625 3' -65.7 NC_005261.1 + 19779 0.66 0.43671
Target:  5'- uCGCCucgaacACGCgGCCCUCCGaGCCgGGGGu -3'
miRNA:   3'- -GCGG------UGCG-CGGGGGGCgCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 57986 0.66 0.43671
Target:  5'- gCGCgGcCGCGCCgCCaaaaaGCGCC-AGGAc -3'
miRNA:   3'- -GCGgU-GCGCGGgGGg----CGCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 123637 0.66 0.43671
Target:  5'- cCGCUGCGCGaucagCCCCaCGCCcAGGAAg -3'
miRNA:   3'- -GCGGUGCGCgg---GGGGcGCGGaUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 31163 0.66 0.43671
Target:  5'- aCGCC-CGCGCCCa--GCGCCgcGGc- -3'
miRNA:   3'- -GCGGuGCGCGGGgggCGCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 39527 0.66 0.43671
Target:  5'- gGCCGCGCGCCUCUaCGCgGCCg----- -3'
miRNA:   3'- gCGGUGCGCGGGGG-GCG-CGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 134992 0.66 0.43671
Target:  5'- gGCCGCcgggGCGCCCCUgGCGCggcGGGc -3'
miRNA:   3'- gCGGUG----CGCGGGGGgCGCGgauCCUu -5'
23625 3' -65.7 NC_005261.1 + 33355 0.66 0.43671
Target:  5'- cCGCCAC-CGCCgCCgggCCGCGCC-GGGc- -3'
miRNA:   3'- -GCGGUGcGCGG-GG---GGCGCGGaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 106479 0.66 0.428191
Target:  5'- gCGCCGgGCuCCCCUCGuCGCCcuGGAc -3'
miRNA:   3'- -GCGGUgCGcGGGGGGC-GCGGauCCUu -5'
23625 3' -65.7 NC_005261.1 + 7 0.66 0.428191
Target:  5'- cCGCCccucgugcaGCGgGCCCCgCGCGaCCccgGGGGGg -3'
miRNA:   3'- -GCGG---------UGCgCGGGGgGCGC-GGa--UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 5142 0.66 0.428191
Target:  5'- gCGCuCGCGCGCCUCggcccggcgggCCGCGUCgagcAGGGc -3'
miRNA:   3'- -GCG-GUGCGCGGGG-----------GGCGCGGa---UCCUu -5'
23625 3' -65.7 NC_005261.1 + 22243 0.66 0.428191
Target:  5'- cCGCCcCGC-CCCUCCGCGCCc----- -3'
miRNA:   3'- -GCGGuGCGcGGGGGGCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 50397 0.66 0.428191
Target:  5'- aCGUCGCGaagGCCggcagCCCCGCGUCgcGGAGc -3'
miRNA:   3'- -GCGGUGCg--CGG-----GGGGCGCGGauCCUU- -5'
23625 3' -65.7 NC_005261.1 + 73806 0.66 0.428191
Target:  5'- uCGgCGCGCagaaGCCgCgCCCGCGCCUAGc-- -3'
miRNA:   3'- -GCgGUGCG----CGG-G-GGGCGCGGAUCcuu -5'
23625 3' -65.7 NC_005261.1 + 100703 0.66 0.428191
Target:  5'- gCGgCGCGCGCCgCCCGaGCCgcGGc- -3'
miRNA:   3'- -GCgGUGCGCGGgGGGCgCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 44859 0.66 0.428191
Target:  5'- aGCCGCgaggaagaGCGCCgCCgcgaGCGCCgcgGGGAu -3'
miRNA:   3'- gCGGUG--------CGCGGgGGg---CGCGGa--UCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.