Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 39992 | 0.66 | 0.88541 |
Target: 5'- ---cCGCCGGcGuGCGUGaAGGCGUa- -3' miRNA: 3'- acaaGCGGUC-CuCGCGCaUCCGCAac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 23465 | 0.66 | 0.88541 |
Target: 5'- ---gCGCCAGGccCGCGgcGGCGa-- -3' miRNA: 3'- acaaGCGGUCCucGCGCauCCGCaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 50987 | 0.66 | 0.88541 |
Target: 5'- --cUCgGCCGacGGcGGCGCGUGGGCGc-- -3' miRNA: 3'- acaAG-CGGU--CC-UCGCGCAUCCGCaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 18434 | 0.66 | 0.878331 |
Target: 5'- cGUccUCGCCGGGcAGCGCGUucccCGUg- -3' miRNA: 3'- aCA--AGCGGUCC-UCGCGCAucc-GCAac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 32914 | 0.66 | 0.871028 |
Target: 5'- gGcgCGCguGGGGgGCGgcGGGCGggGg -3' miRNA: 3'- aCaaGCGguCCUCgCGCa-UCCGCaaC- -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 44260 | 0.66 | 0.855775 |
Target: 5'- ---aCGCCGcGGcGCGCGgggGGGCGggGc -3' miRNA: 3'- acaaGCGGU-CCuCGCGCa--UCCGCaaC- -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 22087 | 0.66 | 0.855775 |
Target: 5'- gGggCGCCgcguGGGGGCGgGaGGGCGg-- -3' miRNA: 3'- aCaaGCGG----UCCUCGCgCaUCCGCaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 14835 | 0.66 | 0.855775 |
Target: 5'- ---gCGCCGGGAGCaCGgcagcAGGCGgcGg -3' miRNA: 3'- acaaGCGGUCCUCGcGCa----UCCGCaaC- -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 64890 | 0.66 | 0.847836 |
Target: 5'- gGgagCGCCGGGuccagcAGCGCGUGguucagcgcGGCGUg- -3' miRNA: 3'- aCaa-GCGGUCC------UCGCGCAU---------CCGCAac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 28765 | 0.67 | 0.839698 |
Target: 5'- ----gGCCGGGGGCGCcUGGGCc--- -3' miRNA: 3'- acaagCGGUCCUCGCGcAUCCGcaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 66921 | 0.67 | 0.839698 |
Target: 5'- cGUgC-CCAGGAGgGCGUcgaAGGCGg-- -3' miRNA: 3'- aCAaGcGGUCCUCgCGCA---UCCGCaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 108169 | 0.67 | 0.831369 |
Target: 5'- cGUcCGCCAGGGcGCGCGgccgcggcuccGGGCGc-- -3' miRNA: 3'- aCAaGCGGUCCU-CGCGCa----------UCCGCaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 72491 | 0.67 | 0.831369 |
Target: 5'- ---gCGCCAGGAGCGCcgcgcgaagcGGGCGc-- -3' miRNA: 3'- acaaGCGGUCCUCGCGca--------UCCGCaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 16400 | 0.67 | 0.831369 |
Target: 5'- cGUcgUCGCCGGGcGGUGCGggagAGGCc--- -3' miRNA: 3'- aCA--AGCGGUCC-UCGCGCa---UCCGcaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 15950 | 0.67 | 0.831369 |
Target: 5'- aGga-GCCGGGGGCGaGUggcGGGCGggGg -3' miRNA: 3'- aCaagCGGUCCUCGCgCA---UCCGCaaC- -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 45351 | 0.67 | 0.830526 |
Target: 5'- aUGUUCcuggagggcugcaGCgAGGAGCGCGUcgGGGCc--- -3' miRNA: 3'- -ACAAG-------------CGgUCCUCGCGCA--UCCGcaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 22736 | 0.67 | 0.822855 |
Target: 5'- ---gCGCCAGucGGGCGCG-GGGCGgcGg -3' miRNA: 3'- acaaGCGGUC--CUCGCGCaUCCGCaaC- -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 80052 | 0.67 | 0.814164 |
Target: 5'- --gUCGCCacuggcGGcGGGCGCGggGGGCGUg- -3' miRNA: 3'- acaAGCGG------UC-CUCGCGCa-UCCGCAac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 127645 | 0.67 | 0.805306 |
Target: 5'- cGgcggCGCCGGGGggcGCGCGgguucgGGGCGg-- -3' miRNA: 3'- aCaa--GCGGUCCU---CGCGCa-----UCCGCaac -5' |
|||||||
23625 | 5' | -56.3 | NC_005261.1 | + | 123995 | 0.68 | 0.796288 |
Target: 5'- gGUaCGCCGaGAGCGCGUAGcGCu--- -3' miRNA: 3'- aCAaGCGGUcCUCGCGCAUC-CGcaac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home