miRNA display CGI


Results 1 - 20 of 649 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23638 3' -62.7 NC_005261.1 + 43793 0.66 0.574775
Target:  5'- -aGGGCGcCGCGggugaGgGgGCGCCgGGCg -3'
miRNA:   3'- ugCCCGU-GUGCag---CgUgCGCGGgCCG- -5'
23638 3' -62.7 NC_005261.1 + 99861 0.66 0.574775
Target:  5'- cCGGccgcCGCGCGcCGC-CGcCGCUCGGCg -3'
miRNA:   3'- uGCCc---GUGUGCaGCGuGC-GCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 128825 0.66 0.574775
Target:  5'- cUGcGGCugACGcUCGCGCGgcuggcCGCCaCGGUg -3'
miRNA:   3'- uGC-CCGugUGC-AGCGUGC------GCGG-GCCG- -5'
23638 3' -62.7 NC_005261.1 + 4829 0.66 0.573808
Target:  5'- uUGGGCGCagGCGgcggCGUcCGCGCCgcagccucaagggCGGCg -3'
miRNA:   3'- uGCCCGUG--UGCa---GCGuGCGCGG-------------GCCG- -5'
23638 3' -62.7 NC_005261.1 + 94629 0.66 0.574775
Target:  5'- cGCcGGCGCcguCGUCgGCGCGCGCgaacaugCGGCu -3'
miRNA:   3'- -UGcCCGUGu--GCAG-CGUGCGCGg------GCCG- -5'
23638 3' -62.7 NC_005261.1 + 126032 0.66 0.574775
Target:  5'- cGCGcGGC-CGCG-CGUACGagugcuccCGCuCCGGCg -3'
miRNA:   3'- -UGC-CCGuGUGCaGCGUGC--------GCG-GGCCG- -5'
23638 3' -62.7 NC_005261.1 + 44027 0.66 0.574775
Target:  5'- gGCGGGCgGC-CGcCGCGCGgCGgCCgcgGGCg -3'
miRNA:   3'- -UGCCCG-UGuGCaGCGUGC-GCgGG---CCG- -5'
23638 3' -62.7 NC_005261.1 + 31794 0.66 0.574775
Target:  5'- cCGcGGCGCA-GUgCGC-CGCGCgCUGGCc -3'
miRNA:   3'- uGC-CCGUGUgCA-GCGuGCGCG-GGCCG- -5'
23638 3' -62.7 NC_005261.1 + 7964 0.66 0.574775
Target:  5'- gUGGGCAaauCGaUCGCcgagGCG-GCCCGGUg -3'
miRNA:   3'- uGCCCGUgu-GC-AGCG----UGCgCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 123498 0.66 0.633234
Target:  5'- cCGGGCGCaccaGCGgcagUGC-CGCGUCCGcuaGCa -3'
miRNA:   3'- uGCCCGUG----UGCa---GCGuGCGCGGGC---CG- -5'
23638 3' -62.7 NC_005261.1 + 45662 0.66 0.574775
Target:  5'- aGCGGGCGugauCAa--CGCGCGC-CCCGGg -3'
miRNA:   3'- -UGCCCGU----GUgcaGCGUGCGcGGGCCg -5'
23638 3' -62.7 NC_005261.1 + 108096 0.66 0.571876
Target:  5'- cUGGGCccguACGCGUCaaaaagcuugaacaGCACGCcGCCCGcCa -3'
miRNA:   3'- uGCCCG----UGUGCAG--------------CGUGCG-CGGGCcG- -5'
23638 3' -62.7 NC_005261.1 + 59726 0.66 0.573808
Target:  5'- cCGGGCGgcaGCGgcggCGCGCGgcCGCCCuccaccaGGCa -3'
miRNA:   3'- uGCCCGUg--UGCa---GCGUGC--GCGGG-------CCG- -5'
23638 3' -62.7 NC_005261.1 + 116028 0.66 0.573808
Target:  5'- gACGGcGCGCAUGgucUGCGCcacgauggccuugGCGCCCcGCg -3'
miRNA:   3'- -UGCC-CGUGUGCa--GCGUG-------------CGCGGGcCG- -5'
23638 3' -62.7 NC_005261.1 + 86689 0.66 0.574775
Target:  5'- gGCGaGGCGgccCACGUaCGCgcccaGCGCGUCCaGCu -3'
miRNA:   3'- -UGC-CCGU---GUGCA-GCG-----UGCGCGGGcCG- -5'
23638 3' -62.7 NC_005261.1 + 115613 0.66 0.574775
Target:  5'- aGCGaGGCcaGCACGUCGCGgcaGCGCagcguCGGg -3'
miRNA:   3'- -UGC-CCG--UGUGCAGCGUg--CGCGg----GCCg -5'
23638 3' -62.7 NC_005261.1 + 75613 0.66 0.571876
Target:  5'- cGCGgacGGCGuCGCGUaCGUggacgacguccaccGCGCGgCCGGCg -3'
miRNA:   3'- -UGC---CCGU-GUGCA-GCG--------------UGCGCgGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 13132 0.66 0.574775
Target:  5'- -gGGGCGCGUGUgGUcggugacgGCGCGCaCCaGGCg -3'
miRNA:   3'- ugCCCGUGUGCAgCG--------UGCGCG-GG-CCG- -5'
23638 3' -62.7 NC_005261.1 + 43858 0.66 0.574775
Target:  5'- gACGcGGC-CGCGUCGUccucgGCG-GCgCGGCu -3'
miRNA:   3'- -UGC-CCGuGUGCAGCG-----UGCgCGgGCCG- -5'
23638 3' -62.7 NC_005261.1 + 53401 0.66 0.574775
Target:  5'- cACGGGCccgaGCuCGUCuGCGCGCcCCCcGCc -3'
miRNA:   3'- -UGCCCG----UGuGCAG-CGUGCGcGGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.