miRNA display CGI


Results 1 - 20 of 649 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23638 3' -62.7 NC_005261.1 + 78 0.68 0.462888
Target:  5'- cGCGGGgGCGgGgUGCgggGCGCGCCCccgGGCc -3'
miRNA:   3'- -UGCCCgUGUgCaGCG---UGCGCGGG---CCG- -5'
23638 3' -62.7 NC_005261.1 + 162 0.72 0.286243
Target:  5'- gGCGGaGUugGCGggGCugGCGCCCcuGGUg -3'
miRNA:   3'- -UGCC-CGugUGCagCGugCGCGGG--CCG- -5'
23638 3' -62.7 NC_005261.1 + 231 0.71 0.326679
Target:  5'- cGCGGGCcC-CG-CGaGCGgGCCCGGCu -3'
miRNA:   3'- -UGCCCGuGuGCaGCgUGCgCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 526 0.66 0.58446
Target:  5'- cGCGGGCGgGCGgggggcagggCGgACgGCGgCUCGGCc -3'
miRNA:   3'- -UGCCCGUgUGCa---------GCgUG-CGC-GGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 1046 0.69 0.430683
Target:  5'- gGCGGGCggcggcguuagcgGCGCGggggGCugGCcccgcuccagggcgaGCCCGGCu -3'
miRNA:   3'- -UGCCCG-------------UGUGCag--CGugCG---------------CGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 1148 0.68 0.462888
Target:  5'- gACGaGGagaGCACuUC-CACGCGCgCCGGCc -3'
miRNA:   3'- -UGC-CCg--UGUGcAGcGUGCGCG-GGCCG- -5'
23638 3' -62.7 NC_005261.1 + 1298 0.67 0.517631
Target:  5'- -gGGGCuCcCGUCGCcggcggcggcACGCGCuCCGGg -3'
miRNA:   3'- ugCCCGuGuGCAGCG----------UGCGCG-GGCCg -5'
23638 3' -62.7 NC_005261.1 + 1367 0.7 0.394961
Target:  5'- cGCGGGCcCugGUC-CGCGUcccaggccacGCCgGGCg -3'
miRNA:   3'- -UGCCCGuGugCAGcGUGCG----------CGGgCCG- -5'
23638 3' -62.7 NC_005261.1 + 1520 0.68 0.471809
Target:  5'- uCGGGCGCcaGCuccagCGCGCGcCGCCCgcaGGCc -3'
miRNA:   3'- uGCCCGUG--UGca---GCGUGC-GCGGG---CCG- -5'
23638 3' -62.7 NC_005261.1 + 1729 0.81 0.079098
Target:  5'- cACGGGCAcCGCGgUGCGCGgGCCCaGGCg -3'
miRNA:   3'- -UGCCCGU-GUGCaGCGUGCgCGGG-CCG- -5'
23638 3' -62.7 NC_005261.1 + 1757 0.68 0.489904
Target:  5'- cGCGuGGcCAC-CGUguagcgcaCGUugGCGCCgCGGCa -3'
miRNA:   3'- -UGC-CC-GUGuGCA--------GCGugCGCGG-GCCG- -5'
23638 3' -62.7 NC_005261.1 + 1841 0.66 0.603919
Target:  5'- uCGGcGCGCGCGaaggCGCcgggcccgaagACGCGCCgcgaGGCc -3'
miRNA:   3'- uGCC-CGUGUGCa---GCG-----------UGCGCGGg---CCG- -5'
23638 3' -62.7 NC_005261.1 + 1888 0.72 0.282424
Target:  5'- cACGGcGCGCGCca-GCGCGCGCCgcucaggccagcgcgCGGCg -3'
miRNA:   3'- -UGCC-CGUGUGcagCGUGCGCGG---------------GCCG- -5'
23638 3' -62.7 NC_005261.1 + 1939 0.67 0.545011
Target:  5'- cGCGGGCAgcacCGCGgcgCGCAgguacacgUGCGCCugcccgaCGGCc -3'
miRNA:   3'- -UGCCCGU----GUGCa--GCGU--------GCGCGG-------GCCG- -5'
23638 3' -62.7 NC_005261.1 + 2007 0.66 0.617589
Target:  5'- cGCGGGguCcacgGCGUCGaucacgaucagccgcCGcCGCGCCgCGGCc -3'
miRNA:   3'- -UGCCCguG----UGCAGC---------------GU-GCGCGG-GCCG- -5'
23638 3' -62.7 NC_005261.1 + 2386 0.71 0.333817
Target:  5'- aGCGGcGCGCugGcggCGaGCGCGCCCgcgGGCc -3'
miRNA:   3'- -UGCC-CGUGugCa--GCgUGCGCGGG---CCG- -5'
23638 3' -62.7 NC_005261.1 + 2552 0.67 0.555521
Target:  5'- cCGcGGCGCugGgCGCGgGCGUgUGGUa -3'
miRNA:   3'- uGC-CCGUGugCaGCGUgCGCGgGCCG- -5'
23638 3' -62.7 NC_005261.1 + 2652 0.71 0.333817
Target:  5'- gGCGGGCAgcgGCGgcucccgccgCGCugGgGaCCCGGCg -3'
miRNA:   3'- -UGCCCGUg--UGCa---------GCGugCgC-GGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 2752 0.67 0.517631
Target:  5'- gGCGGGC---CGUCGCgGCGgGCCUcgaGGCc -3'
miRNA:   3'- -UGCCCGuguGCAGCG-UGCgCGGG---CCG- -5'
23638 3' -62.7 NC_005261.1 + 2975 0.67 0.517631
Target:  5'- cCGGGCugagGCugGggcUCGgcCugGCgGCCCGGCg -3'
miRNA:   3'- uGCCCG----UGugC---AGC--GugCG-CGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.