miRNA display CGI


Results 1 - 20 of 649 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23638 3' -62.7 NC_005261.1 + 57548 1.1 0.000635
Target:  5'- cACGGGCACACGUCGCACGCGCCCGGCu -3'
miRNA:   3'- -UGCCCGUGUGCAGCGUGCGCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 120664 0.87 0.025926
Target:  5'- cGCGGGCGCGCcugugaucUCGCGCGCGcCCCGGCg -3'
miRNA:   3'- -UGCCCGUGUGc-------AGCGUGCGC-GGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 97014 0.85 0.037397
Target:  5'- uUGGGCGgGcCGUCGgGCGCGCCCGGCc -3'
miRNA:   3'- uGCCCGUgU-GCAGCgUGCGCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 69534 0.85 0.041505
Target:  5'- cGCGGGCGCugG-CGCGCGCGCUggggaCGGCg -3'
miRNA:   3'- -UGCCCGUGugCaGCGUGCGCGG-----GCCG- -5'
23638 3' -62.7 NC_005261.1 + 124248 0.81 0.077105
Target:  5'- cGCGGGCAgGCGcCGCGCGgcgcCGCCCGcGCg -3'
miRNA:   3'- -UGCCCGUgUGCaGCGUGC----GCGGGC-CG- -5'
23638 3' -62.7 NC_005261.1 + 108218 0.81 0.077105
Target:  5'- cACGGcGCgcuccaGCAUGgCGCACGUGCCCGGCg -3'
miRNA:   3'- -UGCC-CG------UGUGCaGCGUGCGCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 1729 0.81 0.079098
Target:  5'- cACGGGCAcCGCGgUGCGCGgGCCCaGGCg -3'
miRNA:   3'- -UGCCCGU-GUGCaGCGUGCgCGGG-CCG- -5'
23638 3' -62.7 NC_005261.1 + 31576 0.81 0.079098
Target:  5'- gACGGGCGCGCcggaCGUgaGCGCGCUCGGCg -3'
miRNA:   3'- -UGCCCGUGUGca--GCG--UGCGCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 81243 0.8 0.08114
Target:  5'- gGCGGGCACACGUaaaaGCGCGaguucucCCCGGCc -3'
miRNA:   3'- -UGCCCGUGUGCAg---CGUGCgc-----GGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 35453 0.8 0.08114
Target:  5'- cGCGGGUcuagGCGCGgcgCGCGCGCGuCCCGGg -3'
miRNA:   3'- -UGCCCG----UGUGCa--GCGUGCGC-GGGCCg -5'
23638 3' -62.7 NC_005261.1 + 16989 0.8 0.081971
Target:  5'- uGCGGGUccgcgaucagcgccaGCAUGUCGCACGCGgCCGcGCu -3'
miRNA:   3'- -UGCCCG---------------UGUGCAGCGUGCGCgGGC-CG- -5'
23638 3' -62.7 NC_005261.1 + 72755 0.8 0.085377
Target:  5'- gGCGGGCcgcaugcccaGCACGgcggccgCGCACGCGUCCGGg -3'
miRNA:   3'- -UGCCCG----------UGUGCa------GCGUGCGCGGGCCg -5'
23638 3' -62.7 NC_005261.1 + 118683 0.8 0.085377
Target:  5'- gGCGGGCGCugG-CGCACGCGC--GGCg -3'
miRNA:   3'- -UGCCCGUGugCaGCGUGCGCGggCCG- -5'
23638 3' -62.7 NC_005261.1 + 12721 0.8 0.089823
Target:  5'- uCGGGCGCGCGggccCGCcggcccccuggGCGgGCCCGGCg -3'
miRNA:   3'- uGCCCGUGUGCa---GCG-----------UGCgCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 131607 0.8 0.089823
Target:  5'- cGCGcGCGCACGUa-CGCGCGCCUGGCg -3'
miRNA:   3'- -UGCcCGUGUGCAgcGUGCGCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 46806 0.8 0.089823
Target:  5'- cGCGGcGCGCGCGgaugGCGCGCGCCaGGCg -3'
miRNA:   3'- -UGCC-CGUGUGCag--CGUGCGCGGgCCG- -5'
23638 3' -62.7 NC_005261.1 + 97849 0.8 0.092129
Target:  5'- gGCGGGCGC-CGcCGCggcaGCGCGgCCGGCa -3'
miRNA:   3'- -UGCCCGUGuGCaGCG----UGCGCgGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 59405 0.8 0.092129
Target:  5'- cCGGGCucgccggcgccgGCGCuGUCGCGCG-GCCCGGCa -3'
miRNA:   3'- uGCCCG------------UGUG-CAGCGUGCgCGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 5126 0.8 0.092129
Target:  5'- cGCGGGCggcccgccgGCGC-UCGCGCGCcucgGCCCGGCg -3'
miRNA:   3'- -UGCCCG---------UGUGcAGCGUGCG----CGGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 54125 0.8 0.092129
Target:  5'- cGCGGGCucgucccacgGCACGcCGCACGCGgCCGuGCg -3'
miRNA:   3'- -UGCCCG----------UGUGCaGCGUGCGCgGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.