miRNA display CGI


Results 21 - 40 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23641 5' -60.6 NC_005261.1 + 75979 0.75 0.233424
Target:  5'- -cUCUUcCCGGgCGCGGCCGCCcucgcGCUGGa -3'
miRNA:   3'- gaAGAA-GGUCgGCGUCGGCGG-----CGGCC- -5'
23641 5' -60.6 NC_005261.1 + 99860 0.75 0.238997
Target:  5'- -----aCCGGCCGCcgcgcGCCGCCGCCGc -3'
miRNA:   3'- gaagaaGGUCGGCGu----CGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 105212 0.75 0.24468
Target:  5'- --cUUUCCcgccgcgcgGGCCGCGGCCGCgGCCGu -3'
miRNA:   3'- gaaGAAGG---------UCGGCGUCGGCGgCGGCc -5'
23641 5' -60.6 NC_005261.1 + 124744 0.75 0.24468
Target:  5'- -cUCUcCCcgcAGCCGCAGCgGCCGCCu- -3'
miRNA:   3'- gaAGAaGG---UCGGCGUCGgCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 116903 0.75 0.250476
Target:  5'- -gUCUUCCucgccaacGUCGaCAGCCGCCGCgGGc -3'
miRNA:   3'- gaAGAAGGu-------CGGC-GUCGGCGGCGgCC- -5'
23641 5' -60.6 NC_005261.1 + 94057 0.74 0.2546
Target:  5'- -----cCCAGCgGCGccgggagcagaaccGCCGCCGCCGGg -3'
miRNA:   3'- gaagaaGGUCGgCGU--------------CGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 97109 0.74 0.256384
Target:  5'- -----gCCAGCCG-GGCCGCgGCCGGa -3'
miRNA:   3'- gaagaaGGUCGGCgUCGGCGgCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 47626 0.74 0.268543
Target:  5'- ------gCGGCCGCGGCCGCCGCgCGc -3'
miRNA:   3'- gaagaagGUCGGCGUCGGCGGCG-GCc -5'
23641 5' -60.6 NC_005261.1 + 78848 0.74 0.268543
Target:  5'- -----gCCGGCgGCGcCCGCCGCCGGa -3'
miRNA:   3'- gaagaaGGUCGgCGUcGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 91487 0.74 0.268543
Target:  5'- -----gCC-GCCGCGGCCGCCGCCc- -3'
miRNA:   3'- gaagaaGGuCGGCGUCGGCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 58533 0.74 0.274795
Target:  5'- ----aUCgAGCC-CAGCCGCCGcCCGGg -3'
miRNA:   3'- gaagaAGgUCGGcGUCGGCGGC-GGCC- -5'
23641 5' -60.6 NC_005261.1 + 107840 0.74 0.274795
Target:  5'- -cUCUgcCCGGUCGCcGCCGCCGCCc- -3'
miRNA:   3'- gaAGAa-GGUCGGCGuCGGCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 97178 0.74 0.274795
Target:  5'- -gUCgcgggcgCCGGCCG-GGCCGCgGCCGGa -3'
miRNA:   3'- gaAGaa-----GGUCGGCgUCGGCGgCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 106255 0.74 0.274795
Target:  5'- --cCgggCCGccGCCGCcGCUGCCGCCGGg -3'
miRNA:   3'- gaaGaa-GGU--CGGCGuCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 1160 0.74 0.277328
Target:  5'- --aCUUCCAcgcgcgccggcccgcGCCGCGGCCGggGCCGGg -3'
miRNA:   3'- gaaGAAGGU---------------CGGCGUCGGCggCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 132357 0.74 0.281163
Target:  5'- --gCUUCC-GCCGCGGCgCGCuCGCCGc -3'
miRNA:   3'- gaaGAAGGuCGGCGUCG-GCG-GCGGCc -5'
23641 5' -60.6 NC_005261.1 + 131170 0.74 0.28569
Target:  5'- cCUUCUgcugCCgcAGCggcuacgcccgcggCGCGGUCGCCGCCGGc -3'
miRNA:   3'- -GAAGAa---GG--UCG--------------GCGUCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 16302 0.74 0.28569
Target:  5'- -gUCgggcCCAGCgGCGGCCgggcccucccccucGCCGCCGGu -3'
miRNA:   3'- gaAGaa--GGUCGgCGUCGG--------------CGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 42675 0.74 0.287647
Target:  5'- ------gCGGCCG-GGCCGCCGCCGGc -3'
miRNA:   3'- gaagaagGUCGGCgUCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 32240 0.74 0.287647
Target:  5'- cCUUCUgcgcggCCgcgcugcuggAGCCGCAcgccgaggcGCCGCCGCUGGu -3'
miRNA:   3'- -GAAGAa-----GG----------UCGGCGU---------CGGCGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.