miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23641 5' -60.6 NC_005261.1 + 55913 1.09 0.00106
Target:  5'- gCUUCUUCCAGCCGCAGCCGCCGCCGGc -3'
miRNA:   3'- -GAAGAAGGUCGGCGUCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 7661 0.81 0.092989
Target:  5'- gCUUCaagCGGCCGCGGCCGCCGCCu- -3'
miRNA:   3'- -GAAGaagGUCGGCGUCGGCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 109818 0.81 0.097902
Target:  5'- --gCUUCC-GCCGCGGCgGCCGCCGa -3'
miRNA:   3'- gaaGAAGGuCGGCGUCGgCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 33381 0.79 0.12635
Target:  5'- --gCUgcgggCC-GCCGCAGCCGCCGCCGc -3'
miRNA:   3'- gaaGAa----GGuCGGCGUCGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 21791 0.79 0.132893
Target:  5'- --gCgggCC-GCCGCAGCCGCCGgCCGGg -3'
miRNA:   3'- gaaGaa-GGuCGGCGUCGGCGGC-GGCC- -5'
23641 5' -60.6 NC_005261.1 + 121608 0.79 0.138699
Target:  5'- gUUCUcguacaccgccgccUCCcGCCGCucggcGGCCGCCGCCGGc -3'
miRNA:   3'- gAAGA--------------AGGuCGGCG-----UCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 33409 0.79 0.139747
Target:  5'- -----gCCGccGCCGCAGCCGCCGCCGc -3'
miRNA:   3'- gaagaaGGU--CGGCGUCGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 33433 0.79 0.139747
Target:  5'- -----gCCGccGCCGCAGCCGCCGCCGc -3'
miRNA:   3'- gaagaaGGU--CGGCGUCGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 33457 0.79 0.139747
Target:  5'- -----gCCGccGCCGCAGCCGCCGCCGc -3'
miRNA:   3'- gaagaaGGU--CGGCGUCGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 114541 0.78 0.162292
Target:  5'- -aUCUUCaacaacuaccuCGGCggggaGCGGCCGCCGCCGGa -3'
miRNA:   3'- gaAGAAG-----------GUCGg----CGUCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 33970 0.77 0.170507
Target:  5'- cCUUCUgCC-GCCGCcGCCGCCGCCccGGa -3'
miRNA:   3'- -GAAGAaGGuCGGCGuCGGCGGCGG--CC- -5'
23641 5' -60.6 NC_005261.1 + 83091 0.77 0.170507
Target:  5'- --gCUUCCAgcgccuccagcGCCGCcGCCGCCGCCGc -3'
miRNA:   3'- gaaGAAGGU-----------CGGCGuCGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 95724 0.77 0.189898
Target:  5'- -cUCgggCCcGCCGCGcucagcggcgccgccGCCGCCGCCGGg -3'
miRNA:   3'- gaAGaa-GGuCGGCGU---------------CGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 61071 0.76 0.197418
Target:  5'- aCUUCUUCCuGCCggcgcucacggGCAGCUcgGCCGCCGa -3'
miRNA:   3'- -GAAGAAGGuCGG-----------CGUCGG--CGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 98754 0.76 0.211708
Target:  5'- -gUUggCCGcgcgguuGCCGCuGCCGCCGCCGGc -3'
miRNA:   3'- gaAGaaGGU-------CGGCGuCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 100130 0.76 0.217358
Target:  5'- -----aCCGGCCGCAGCCcCCGCuCGGc -3'
miRNA:   3'- gaagaaGGUCGGCGUCGGcGGCG-GCC- -5'
23641 5' -60.6 NC_005261.1 + 16245 0.76 0.217358
Target:  5'- -gUCgacgUCCGcGCCGgGGCCGCCgggGCCGGg -3'
miRNA:   3'- gaAGa---AGGU-CGGCgUCGGCGG---CGGCC- -5'
23641 5' -60.6 NC_005261.1 + 1562 0.75 0.222605
Target:  5'- -----aCCGGCCGCAGCgGCgCGCCGa -3'
miRNA:   3'- gaagaaGGUCGGCGUCGgCG-GCGGCc -5'
23641 5' -60.6 NC_005261.1 + 12337 0.75 0.222605
Target:  5'- -cUUggCCGG-CGCGGCCGCCGCCGcGg -3'
miRNA:   3'- gaAGaaGGUCgGCGUCGGCGGCGGC-C- -5'
23641 5' -60.6 NC_005261.1 + 111296 0.75 0.233424
Target:  5'- --cCUUCCGccGCCGCugccuccGCCGCCGCCGc -3'
miRNA:   3'- gaaGAAGGU--CGGCGu------CGGCGGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.