miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23641 5' -60.6 NC_005261.1 + 201 0.7 0.441759
Target:  5'- -----gCCAG-CGguGCCGCCGCCGc -3'
miRNA:   3'- gaagaaGGUCgGCguCGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 551 0.66 0.672604
Target:  5'- ------aCGGCgGCucGGCCGCCGCgCGGu -3'
miRNA:   3'- gaagaagGUCGgCG--UCGGCGGCG-GCC- -5'
23641 5' -60.6 NC_005261.1 + 1160 0.74 0.277328
Target:  5'- --aCUUCCAcgcgcgccggcccgcGCCGCGGCCGggGCCGGg -3'
miRNA:   3'- gaaGAAGGU---------------CGGCGUCGGCggCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 1307 0.66 0.720576
Target:  5'- -gUCg-CCGGCgGCGGCacgcgcuccgggaCGCCGCCGc -3'
miRNA:   3'- gaAGaaGGUCGgCGUCG-------------GCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 1406 0.67 0.632841
Target:  5'- ------gCGGCCGCGGCgGCgGCgGGg -3'
miRNA:   3'- gaagaagGUCGGCGUCGgCGgCGgCC- -5'
23641 5' -60.6 NC_005261.1 + 1481 0.67 0.642802
Target:  5'- ------gCGGCCGCGcagaaggccaccGCCGCgGCCGGc -3'
miRNA:   3'- gaagaagGUCGGCGU------------CGGCGgCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 1562 0.75 0.222605
Target:  5'- -----aCCGGCCGCAGCgGCgCGCCGa -3'
miRNA:   3'- gaagaaGGUCGGCGUCGgCG-GCGGCc -5'
23641 5' -60.6 NC_005261.1 + 1687 0.72 0.366741
Target:  5'- ----gUCgAGCCGCGGCagcacgCGCUGCCGGu -3'
miRNA:   3'- gaagaAGgUCGGCGUCG------GCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 1912 0.68 0.593065
Target:  5'- -cUCaggCCAGCgCGCGGCgcacugCGCCGCgGGc -3'
miRNA:   3'- gaAGaa-GGUCG-GCGUCG------GCGGCGgCC- -5'
23641 5' -60.6 NC_005261.1 + 2042 0.68 0.583172
Target:  5'- -----gCCGcGCCGCGGCCaGCCGCaGGc -3'
miRNA:   3'- gaagaaGGU-CGGCGUCGG-CGGCGgCC- -5'
23641 5' -60.6 NC_005261.1 + 2356 0.68 0.553717
Target:  5'- -aUCUgcgacaUCCAggccacgcgccGCCGCAGCgGCgCGCUGGc -3'
miRNA:   3'- gaAGA------AGGU-----------CGGCGUCGgCG-GCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 2685 0.66 0.662691
Target:  5'- -----cCCGGCgGCgcgccggcuuuuGGCCGgCGCCGGg -3'
miRNA:   3'- gaagaaGGUCGgCG------------UCGGCgGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 2772 0.66 0.69233
Target:  5'- -cUCgaggCCcGCCcccgaGgGGCUGCCGCCGGc -3'
miRNA:   3'- gaAGaa--GGuCGG-----CgUCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 2919 0.71 0.382639
Target:  5'- -cUCcUCCGGCCccaGCAccuccaccGCCGCgGCCGGg -3'
miRNA:   3'- gaAGaAGGUCGG---CGU--------CGGCGgCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 3390 0.71 0.424336
Target:  5'- -----gCCAGCCGC-GCCGgcacuuCCGCCGGc -3'
miRNA:   3'- gaagaaGGUCGGCGuCGGC------GGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 3524 0.69 0.51518
Target:  5'- ----cUCCAG-CGCGGCgGCCGCCu- -3'
miRNA:   3'- gaagaAGGUCgGCGUCGgCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 3719 0.66 0.662691
Target:  5'- -----cUCAGaCGC-GCCGCUGCCGGa -3'
miRNA:   3'- gaagaaGGUCgGCGuCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 3797 0.68 0.593065
Target:  5'- -gUCcgCCAGCucgCGCAGCCGCuCGCgCGc -3'
miRNA:   3'- gaAGaaGGUCG---GCGUCGGCG-GCG-GCc -5'
23641 5' -60.6 NC_005261.1 + 4404 0.7 0.441759
Target:  5'- ------gCGGCgGCGGCgCGCUGCCGGg -3'
miRNA:   3'- gaagaagGUCGgCGUCG-GCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 4459 0.66 0.682487
Target:  5'- ----cUCCAGCgGCGGCggccCGUCGCgCGGc -3'
miRNA:   3'- gaagaAGGUCGgCGUCG----GCGGCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.