miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23641 5' -60.6 NC_005261.1 + 3719 0.66 0.662691
Target:  5'- -----cUCAGaCGC-GCCGCUGCCGGa -3'
miRNA:   3'- gaagaaGGUCgGCGuCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 118126 0.66 0.72154
Target:  5'- -----gCCGGCuCGC-GCCGCUcgGCCGGc -3'
miRNA:   3'- gaagaaGGUCG-GCGuCGGCGG--CGGCC- -5'
23641 5' -60.6 NC_005261.1 + 46246 0.66 0.672604
Target:  5'- -gUCgca-GGCCGCGGCgGCgGCCGc -3'
miRNA:   3'- gaAGaaggUCGGCGUCGgCGgCGGCc -5'
23641 5' -60.6 NC_005261.1 + 2685 0.66 0.662691
Target:  5'- -----cCCGGCgGCgcgccggcuuuuGGCCGgCGCCGGg -3'
miRNA:   3'- gaagaaGGUCGgCG------------UCGGCgGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 98682 0.66 0.662691
Target:  5'- -cUCcgCCggGGCCGgAGgCGCgGCCGGa -3'
miRNA:   3'- gaAGaaGG--UCGGCgUCgGCGgCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 138222 0.66 0.672604
Target:  5'- ------aCGGCgGCucGGCCGCCGCgCGGu -3'
miRNA:   3'- gaagaagGUCGgCG--UCGGCGGCG-GCC- -5'
23641 5' -60.6 NC_005261.1 + 119973 0.66 0.672604
Target:  5'- -gUCUccgUCgAGCCcCGGCCGaCGCUGGa -3'
miRNA:   3'- gaAGA---AGgUCGGcGUCGGCgGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 111617 0.66 0.662691
Target:  5'- gCUgggCUgcggcgCCGuGCCGCcGCCGCcCGCCGc -3'
miRNA:   3'- -GAa--GAa-----GGU-CGGCGuCGGCG-GCGGCc -5'
23641 5' -60.6 NC_005261.1 + 80847 0.66 0.672604
Target:  5'- -gUCgugugCCAGCCGCGcaccccaggcgcGCUcaGCCGCgCGGg -3'
miRNA:   3'- gaAGaa---GGUCGGCGU------------CGG--CGGCG-GCC- -5'
23641 5' -60.6 NC_005261.1 + 110619 0.66 0.662691
Target:  5'- -----gCCgAGCUGCGGCUGgagcCCGCCGGc -3'
miRNA:   3'- gaagaaGG-UCGGCGUCGGC----GGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 551 0.66 0.672604
Target:  5'- ------aCGGCgGCucGGCCGCCGCgCGGu -3'
miRNA:   3'- gaagaagGUCGgCG--UCGGCGGCG-GCC- -5'
23641 5' -60.6 NC_005261.1 + 133830 0.66 0.662691
Target:  5'- --gCUgCgCGGCCGCGugcgcGCCGUgGCCGGc -3'
miRNA:   3'- gaaGAaG-GUCGGCGU-----CGGCGgCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 85987 0.66 0.662691
Target:  5'- ----cUCgAGCUGC-GCCGCCGaCGGg -3'
miRNA:   3'- gaagaAGgUCGGCGuCGGCGGCgGCC- -5'
23641 5' -60.6 NC_005261.1 + 30901 0.66 0.661698
Target:  5'- -cUCgggCUggGGCCGCccGGCCccucccgGCCGCCGGc -3'
miRNA:   3'- gaAGaa-GG--UCGGCG--UCGG-------CGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 107689 0.66 0.662691
Target:  5'- -----gCC-GCCGCGGCgggggCGCCGCCGa -3'
miRNA:   3'- gaagaaGGuCGGCGUCG-----GCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 101619 0.66 0.672604
Target:  5'- -cUCUagcgCCucucgcGCCGCGGCCGCgucgCGCCGc -3'
miRNA:   3'- gaAGAa---GGu-----CGGCGUCGGCG----GCGGCc -5'
23641 5' -60.6 NC_005261.1 + 101451 0.66 0.662691
Target:  5'- ----gUCCAG-CGCuGGCCccagcGCCGCCGGc -3'
miRNA:   3'- gaagaAGGUCgGCG-UCGG-----CGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 11972 0.66 0.662691
Target:  5'- ----cUCCAGCgcaGCAGCCGCgUGUCGa -3'
miRNA:   3'- gaagaAGGUCGg--CGUCGGCG-GCGGCc -5'
23641 5' -60.6 NC_005261.1 + 116167 0.66 0.662691
Target:  5'- ------gCGGUCGCGGCCgcguccccgacGCCGCUGGg -3'
miRNA:   3'- gaagaagGUCGGCGUCGG-----------CGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 95361 0.66 0.662691
Target:  5'- -cUCUUCCAGggguacuucUCGCGGCC-CC-CCGGc -3'
miRNA:   3'- gaAGAAGGUC---------GGCGUCGGcGGcGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.