Results 1 - 20 of 333 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23641 | 5' | -60.6 | NC_005261.1 | + | 118126 | 0.66 | 0.72154 |
Target: 5'- -----gCCGGCuCGC-GCCGCUcgGCCGGc -3' miRNA: 3'- gaagaaGGUCG-GCGuCGGCGG--CGGCC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 95724 | 0.77 | 0.189898 |
Target: 5'- -cUCgggCCcGCCGCGcucagcggcgccgccGCCGCCGCCGGg -3' miRNA: 3'- gaAGaa-GGuCGGCGU---------------CGGCGGCGGCC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 61071 | 0.76 | 0.197418 |
Target: 5'- aCUUCUUCCuGCCggcgcucacggGCAGCUcgGCCGCCGa -3' miRNA: 3'- -GAAGAAGGuCGG-----------CGUCGG--CGGCGGCc -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 98754 | 0.76 | 0.211708 |
Target: 5'- -gUUggCCGcgcgguuGCCGCuGCCGCCGCCGGc -3' miRNA: 3'- gaAGaaGGU-------CGGCGuCGGCGGCGGCC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 16245 | 0.76 | 0.217358 |
Target: 5'- -gUCgacgUCCGcGCCGgGGCCGCCgggGCCGGg -3' miRNA: 3'- gaAGa---AGGU-CGGCgUCGGCGG---CGGCC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 100130 | 0.76 | 0.217358 |
Target: 5'- -----aCCGGCCGCAGCCcCCGCuCGGc -3' miRNA: 3'- gaagaaGGUCGGCGUCGGcGGCG-GCC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 1562 | 0.75 | 0.222605 |
Target: 5'- -----aCCGGCCGCAGCgGCgCGCCGa -3' miRNA: 3'- gaagaaGGUCGGCGUCGgCG-GCGGCc -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 12337 | 0.75 | 0.222605 |
Target: 5'- -cUUggCCGG-CGCGGCCGCCGCCGcGg -3' miRNA: 3'- gaAGaaGGUCgGCGUCGGCGGCGGC-C- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 75979 | 0.75 | 0.233424 |
Target: 5'- -cUCUUcCCGGgCGCGGCCGCCcucgcGCUGGa -3' miRNA: 3'- gaAGAA-GGUCgGCGUCGGCGG-----CGGCC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 33970 | 0.77 | 0.170507 |
Target: 5'- cCUUCUgCC-GCCGCcGCCGCCGCCccGGa -3' miRNA: 3'- -GAAGAaGGuCGGCGuCGGCGGCGG--CC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 83091 | 0.77 | 0.170507 |
Target: 5'- --gCUUCCAgcgccuccagcGCCGCcGCCGCCGCCGc -3' miRNA: 3'- gaaGAAGGU-----------CGGCGuCGGCGGCGGCc -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 114541 | 0.78 | 0.162292 |
Target: 5'- -aUCUUCaacaacuaccuCGGCggggaGCGGCCGCCGCCGGa -3' miRNA: 3'- gaAGAAG-----------GUCGg----CGUCGGCGGCGGCC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 7661 | 0.81 | 0.092989 |
Target: 5'- gCUUCaagCGGCCGCGGCCGCCGCCu- -3' miRNA: 3'- -GAAGaagGUCGGCGUCGGCGGCGGcc -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 109818 | 0.81 | 0.097902 |
Target: 5'- --gCUUCC-GCCGCGGCgGCCGCCGa -3' miRNA: 3'- gaaGAAGGuCGGCGUCGgCGGCGGCc -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 33381 | 0.79 | 0.12635 |
Target: 5'- --gCUgcgggCC-GCCGCAGCCGCCGCCGc -3' miRNA: 3'- gaaGAa----GGuCGGCGUCGGCGGCGGCc -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 21791 | 0.79 | 0.132893 |
Target: 5'- --gCgggCC-GCCGCAGCCGCCGgCCGGg -3' miRNA: 3'- gaaGaa-GGuCGGCGUCGGCGGC-GGCC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 121608 | 0.79 | 0.138699 |
Target: 5'- gUUCUcguacaccgccgccUCCcGCCGCucggcGGCCGCCGCCGGc -3' miRNA: 3'- gAAGA--------------AGGuCGGCG-----UCGGCGGCGGCC- -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 33409 | 0.79 | 0.139747 |
Target: 5'- -----gCCGccGCCGCAGCCGCCGCCGc -3' miRNA: 3'- gaagaaGGU--CGGCGUCGGCGGCGGCc -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 33433 | 0.79 | 0.139747 |
Target: 5'- -----gCCGccGCCGCAGCCGCCGCCGc -3' miRNA: 3'- gaagaaGGU--CGGCGUCGGCGGCGGCc -5' |
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23641 | 5' | -60.6 | NC_005261.1 | + | 33457 | 0.79 | 0.139747 |
Target: 5'- -----gCCGccGCCGCAGCCGCCGCCGc -3' miRNA: 3'- gaagaaGGU--CGGCGUCGGCGGCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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