miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 3' -56 NC_005261.1 + 23707 0.66 0.872273
Target:  5'- -cCCGC-CCGgucggGUGGCAagcggguggCCGCGCCGa -3'
miRNA:   3'- caGGCGcGGCa----UAUUGUa--------GGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 101855 0.66 0.899954
Target:  5'- -cCCGCcgGCCGccUGcagcACGUCCGCGCgCAg -3'
miRNA:   3'- caGGCG--CGGCauAU----UGUAGGCGCG-GU- -5'
23647 3' -56 NC_005261.1 + 98297 0.66 0.864794
Target:  5'- cGUCCGCgGCCucgggGGCGggcgCCGcCGCCAg -3'
miRNA:   3'- -CAGGCG-CGGcaua-UUGUa---GGC-GCGGU- -5'
23647 3' -56 NC_005261.1 + 55247 0.66 0.872273
Target:  5'- -aCCGCaGCCGccgcgagGAgGUCUGCGCCc -3'
miRNA:   3'- caGGCG-CGGCaua----UUgUAGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 129313 0.66 0.864794
Target:  5'- -cCCGCGCCugcgcUGGCG-CCGCGUCGc -3'
miRNA:   3'- caGGCGCGGcau--AUUGUaGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 76664 0.66 0.872273
Target:  5'- gGUCgGCGCCGUGcUGGC--CCuCGCCGa -3'
miRNA:   3'- -CAGgCGCGGCAU-AUUGuaGGcGCGGU- -5'
23647 3' -56 NC_005261.1 + 134331 0.66 0.872273
Target:  5'- gGUCuCGCuGCUGUAccGCAagcccCCGCGCCGc -3'
miRNA:   3'- -CAG-GCG-CGGCAUauUGUa----GGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 35059 0.66 0.864794
Target:  5'- -gCCGCGCgGc--GGCGgucUCCGCGCCc -3'
miRNA:   3'- caGGCGCGgCauaUUGU---AGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 120013 0.66 0.872273
Target:  5'- --aCGCgGCCGUGUG----CCGCGCCGc -3'
miRNA:   3'- cagGCG-CGGCAUAUuguaGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 132695 0.66 0.864794
Target:  5'- uUCCGCgugGCCGUGcc-CGUCCcgGCGCCc -3'
miRNA:   3'- cAGGCG---CGGCAUauuGUAGG--CGCGGu -5'
23647 3' -56 NC_005261.1 + 102266 0.66 0.864794
Target:  5'- cUCCaGCGcCCGgucGGCcugCCGCGCCAg -3'
miRNA:   3'- cAGG-CGC-GGCauaUUGua-GGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 131807 0.66 0.872273
Target:  5'- -gCCGCGCC---UGACGg-CGCGCCGc -3'
miRNA:   3'- caGGCGCGGcauAUUGUagGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 104729 0.66 0.879534
Target:  5'- --gCGCGUCGUGccGCGUgCgCGCGCCGu -3'
miRNA:   3'- cagGCGCGGCAUauUGUA-G-GCGCGGU- -5'
23647 3' -56 NC_005261.1 + 21767 0.66 0.864794
Target:  5'- --gCGCGCCGggcgAGCcgCCGCGgCGc -3'
miRNA:   3'- cagGCGCGGCaua-UUGuaGGCGCgGU- -5'
23647 3' -56 NC_005261.1 + 82112 0.66 0.864794
Target:  5'- gGUgCGCGUCGaagGUGGCGUCCgagGCGCg- -3'
miRNA:   3'- -CAgGCGCGGCa--UAUUGUAGG---CGCGgu -5'
23647 3' -56 NC_005261.1 + 47920 0.66 0.879534
Target:  5'- -aCCGCGCgGccGUcACGUCCcgcGCGCCGc -3'
miRNA:   3'- caGGCGCGgCa-UAuUGUAGG---CGCGGU- -5'
23647 3' -56 NC_005261.1 + 28370 0.66 0.879534
Target:  5'- -aCCGaccaGCCGgcUGGCcgacCCGCGCCu -3'
miRNA:   3'- caGGCg---CGGCauAUUGua--GGCGCGGu -5'
23647 3' -56 NC_005261.1 + 6607 0.66 0.864794
Target:  5'- gGUCUG-GCaUGUGgAACAUCCGCGuCCGa -3'
miRNA:   3'- -CAGGCgCG-GCAUaUUGUAGGCGC-GGU- -5'
23647 3' -56 NC_005261.1 + 37105 0.66 0.879534
Target:  5'- aGUCCGCGCgGcUGUAcucucUgCGCGCCGg -3'
miRNA:   3'- -CAGGCGCGgC-AUAUugu--AgGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 111298 0.66 0.872273
Target:  5'- uUCCGcCGCCGcu--GCcUCCGcCGCCGc -3'
miRNA:   3'- cAGGC-GCGGCauauUGuAGGC-GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.