miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 3' -56 NC_005261.1 + 1257 0.7 0.711268
Target:  5'- aGUCCGUGcCCGgggGUGACugugCCgGCGCCc -3'
miRNA:   3'- -CAGGCGC-GGCa--UAUUGua--GG-CGCGGu -5'
23647 3' -56 NC_005261.1 + 3340 0.66 0.893378
Target:  5'- -cCCGCGCCGc--GGCGcCCggcGCGCCGg -3'
miRNA:   3'- caGGCGCGGCauaUUGUaGG---CGCGGU- -5'
23647 3' -56 NC_005261.1 + 3462 0.72 0.578009
Target:  5'- -gCCGCGCCGc---GCGUcgaguaCCGCGCCAg -3'
miRNA:   3'- caGGCGCGGCauauUGUA------GGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 3591 0.67 0.841106
Target:  5'- -aCCGCGUCGcggg----CCGCGCCAa -3'
miRNA:   3'- caGGCGCGGCauauuguaGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 3739 0.71 0.639713
Target:  5'- --aCGCGCCGgcggcGCA-CCGCGCCGc -3'
miRNA:   3'- cagGCGCGGCauau-UGUaGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 4145 0.7 0.680829
Target:  5'- --aCGCGCCGcUGcAGCAggCGCGCCAg -3'
miRNA:   3'- cagGCGCGGC-AUaUUGUagGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 4822 0.75 0.427121
Target:  5'- cUCCGCGuuGggcgcaggcggcGGCGUCCGCGCCGc -3'
miRNA:   3'- cAGGCGCggCaua---------UUGUAGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 4928 0.71 0.639713
Target:  5'- -gCCGCgGCCGcg-AGCGcCCGCGCCGc -3'
miRNA:   3'- caGGCG-CGGCauaUUGUaGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 5489 0.68 0.80686
Target:  5'- --gCGCGCCGggggGUAGCuggggCCGCGgCAg -3'
miRNA:   3'- cagGCGCGGCa---UAUUGua---GGCGCgGU- -5'
23647 3' -56 NC_005261.1 + 6607 0.66 0.864794
Target:  5'- gGUCUG-GCaUGUGgAACAUCCGCGuCCGa -3'
miRNA:   3'- -CAGGCgCG-GCAUaUUGUAGGCGC-GGU- -5'
23647 3' -56 NC_005261.1 + 12082 0.75 0.43251
Target:  5'- cGUCCGCGCCGg--GGCGgcucaaaggcgCgGCGCCAg -3'
miRNA:   3'- -CAGGCGCGGCauaUUGUa----------GgCGCGGU- -5'
23647 3' -56 NC_005261.1 + 12530 0.68 0.770045
Target:  5'- -cCCGCGCCGccgccgaauuUAUAcGCGggggccCCGCGCCGg -3'
miRNA:   3'- caGGCGCGGC----------AUAU-UGUa-----GGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 12637 0.69 0.72129
Target:  5'- aGUCCgGCGCgGUcUGGgG-CCGCGCCGg -3'
miRNA:   3'- -CAGG-CGCGgCAuAUUgUaGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 14988 0.68 0.770045
Target:  5'- -gCCGCGCCGg-------CCGCGCCc -3'
miRNA:   3'- caGGCGCGGCauauuguaGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 16250 0.75 0.42355
Target:  5'- cGUCCGCGCCGg--GGCcgCCgGgGCCGg -3'
miRNA:   3'- -CAGGCGCGGCauaUUGuaGG-CgCGGU- -5'
23647 3' -56 NC_005261.1 + 16589 0.69 0.745007
Target:  5'- aGUCCuggaucgggaagcagGCGCCGaaggUAUAcccGCGcUCCGCGCCGa -3'
miRNA:   3'- -CAGG---------------CGCGGC----AUAU---UGU-AGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 16696 0.73 0.517689
Target:  5'- -aCCGCGCCGUcgAuguACAgCgCGCGCCGg -3'
miRNA:   3'- caGGCGCGGCAuaU---UGUaG-GCGCGGU- -5'
23647 3' -56 NC_005261.1 + 21105 0.66 0.899954
Target:  5'- -aCCGCGCCGg--GACAUCaUGUacuGCCc -3'
miRNA:   3'- caGGCGCGGCauaUUGUAG-GCG---CGGu -5'
23647 3' -56 NC_005261.1 + 21377 0.66 0.893378
Target:  5'- -aCCGCGCCGgaggcgcgGuccacuuugaguGCGUucCCGCGCCGc -3'
miRNA:   3'- caGGCGCGGCaua-----U------------UGUA--GGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 21767 0.66 0.864794
Target:  5'- --gCGCGCCGggcgAGCcgCCGCGgCGc -3'
miRNA:   3'- cagGCGCGGCaua-UUGuaGGCGCgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.