miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 3' -56 NC_005261.1 + 50676 1.09 0.002671
Target:  5'- aGUCCGCGCCGUAUAACAUCCGCGCCAg -3'
miRNA:   3'- -CAGGCGCGGCAUAUUGUAGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 82417 0.78 0.276274
Target:  5'- -cCCGCGCCGgccccgcCGUCCGCGCCc -3'
miRNA:   3'- caGGCGCGGCauauu--GUAGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 122718 0.78 0.296523
Target:  5'- -gCCGCGCCGUcgAuguucACGUCgGCGCCGc -3'
miRNA:   3'- caGGCGCGGCAuaU-----UGUAGgCGCGGU- -5'
23647 3' -56 NC_005261.1 + 60165 0.77 0.310652
Target:  5'- -gCCGCuGCCGUGgaagcGCGUCUGCGCCGc -3'
miRNA:   3'- caGGCG-CGGCAUau---UGUAGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 108385 0.76 0.377157
Target:  5'- cGUCCGCGCCcgcgcgcuccAGCAgCCGCGCCAc -3'
miRNA:   3'- -CAGGCGCGGcaua------UUGUaGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 46961 0.75 0.397352
Target:  5'- aGUCCGCGCCGUcgccgcuGCcgCCGCccGCCGg -3'
miRNA:   3'- -CAGGCGCGGCAuau----UGuaGGCG--CGGU- -5'
23647 3' -56 NC_005261.1 + 60873 0.75 0.414702
Target:  5'- -cCCGCGCCGUGUu-CAcCCGCGCg- -3'
miRNA:   3'- caGGCGCGGCAUAuuGUaGGCGCGgu -5'
23647 3' -56 NC_005261.1 + 16250 0.75 0.42355
Target:  5'- cGUCCGCGCCGg--GGCcgCCgGgGCCGg -3'
miRNA:   3'- -CAGGCGCGGCauaUUGuaGG-CgCGGU- -5'
23647 3' -56 NC_005261.1 + 4822 0.75 0.427121
Target:  5'- cUCCGCGuuGggcgcaggcggcGGCGUCCGCGCCGc -3'
miRNA:   3'- cAGGCGCggCaua---------UUGUAGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 12082 0.75 0.43251
Target:  5'- cGUCCGCGCCGg--GGCGgcucaaaggcgCgGCGCCAg -3'
miRNA:   3'- -CAGGCGCGGCauaUUGUa----------GgCGCGGU- -5'
23647 3' -56 NC_005261.1 + 45961 0.74 0.44158
Target:  5'- ---gGCGCCGUugAGCAUgCGCGCCAg -3'
miRNA:   3'- caggCGCGGCAuaUUGUAgGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 88484 0.74 0.478893
Target:  5'- -gCCGCGCCGg--AGCGcgCCGCGCUc -3'
miRNA:   3'- caGGCGCGGCauaUUGUa-GGCGCGGu -5'
23647 3' -56 NC_005261.1 + 117633 0.74 0.478893
Target:  5'- -aCCGCGCCGggcccGCG-CCGCGCCc -3'
miRNA:   3'- caGGCGCGGCauau-UGUaGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 70810 0.73 0.488464
Target:  5'- aGUCCGCGCCGgcggcccCGggCGCGCCGg -3'
miRNA:   3'- -CAGGCGCGGCauauu--GUagGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 86468 0.73 0.507866
Target:  5'- -cCCGCGCCGUugaugGACGcggCCGgGCCGg -3'
miRNA:   3'- caGGCGCGGCAua---UUGUa--GGCgCGGU- -5'
23647 3' -56 NC_005261.1 + 101651 0.73 0.517689
Target:  5'- -gCCGCaCCGUGcucAGCAUCUGCGCCu -3'
miRNA:   3'- caGGCGcGGCAUa--UUGUAGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 16696 0.73 0.517689
Target:  5'- -aCCGCGCCGUcgAuguACAgCgCGCGCCGg -3'
miRNA:   3'- caGGCGCGGCAuaU---UGUaG-GCGCGGU- -5'
23647 3' -56 NC_005261.1 + 102580 0.73 0.527588
Target:  5'- cGUCCGCGUCGgcggccuCGcCCGCGCCu -3'
miRNA:   3'- -CAGGCGCGGCauauu--GUaGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 115913 0.73 0.527588
Target:  5'- cGUCaGCGCCGgccgccGCGUCCGCGCgCGg -3'
miRNA:   3'- -CAGgCGCGGCauau--UGUAGGCGCG-GU- -5'
23647 3' -56 NC_005261.1 + 103246 0.73 0.527588
Target:  5'- cGUCCGCGCgccc--GCGUCCGCGCaCAg -3'
miRNA:   3'- -CAGGCGCGgcauauUGUAGGCGCG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.