miRNA display CGI


Results 1 - 20 of 350 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 5' -55.9 NC_005261.1 + 61401 0.66 0.888877
Target:  5'- aCUCcgGGCGCGUggUG-GCCUcgcaggaccuggCCUCGCUg -3'
miRNA:   3'- -GAG--CUGCGUAuuGCgCGGA------------GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 69357 0.66 0.888877
Target:  5'- -aCGACGCGgccgcgcGCGCGCUggaCCUCGa- -3'
miRNA:   3'- gaGCUGCGUau-----UGCGCGGa--GGAGCgg -5'
23647 5' -55.9 NC_005261.1 + 100418 0.66 0.888877
Target:  5'- --gGGCGCAUcGAgGCGCCcgCCUgcgaguacagCGCCa -3'
miRNA:   3'- gagCUGCGUA-UUgCGCGGa-GGA----------GCGG- -5'
23647 5' -55.9 NC_005261.1 + 50887 0.66 0.89157
Target:  5'- -cUGGCGCugcuauGCuggucaccuugaucgGCGCCgCCUCGCCg -3'
miRNA:   3'- gaGCUGCGuau---UG---------------CGCGGaGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 55193 0.66 0.888877
Target:  5'- aUCGGCGCAcggcgUAGCGCGgaUCCggcgGCCc -3'
miRNA:   3'- gAGCUGCGU-----AUUGCGCggAGGag--CGG- -5'
23647 5' -55.9 NC_005261.1 + 105127 0.66 0.888877
Target:  5'- --gGGCGCGggccgccggcGCGCGCaggUCCUCGCg -3'
miRNA:   3'- gagCUGCGUau--------UGCGCGg--AGGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 87628 0.66 0.888877
Target:  5'- uUgGGCGCG-AACGcCGCCUCCacggugaGCCc -3'
miRNA:   3'- gAgCUGCGUaUUGC-GCGGAGGag-----CGG- -5'
23647 5' -55.9 NC_005261.1 + 39299 0.66 0.895542
Target:  5'- --gGugGCGgacuacACGCGgUUCCUCGCg -3'
miRNA:   3'- gagCugCGUau----UGCGCgGAGGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 67679 0.66 0.895542
Target:  5'- --aGGCGCGgugAGCGCGUCaagaagUCCacgUCGCCc -3'
miRNA:   3'- gagCUGCGUa--UUGCGCGG------AGG---AGCGG- -5'
23647 5' -55.9 NC_005261.1 + 82530 0.66 0.888877
Target:  5'- gUCGGCccCAUccuCGCcccCCUCCUCGCCc -3'
miRNA:   3'- gAGCUGc-GUAuu-GCGc--GGAGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 61883 0.66 0.895542
Target:  5'- -aCGAUGg-----GCGCCUUCUCGCCc -3'
miRNA:   3'- gaGCUGCguauugCGCGGAGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 93918 0.66 0.895542
Target:  5'- -gCGGCGCccgcgGGCuuGCGCCgUCCgcgggCGCCg -3'
miRNA:   3'- gaGCUGCGua---UUG--CGCGG-AGGa----GCGG- -5'
23647 5' -55.9 NC_005261.1 + 76843 0.66 0.888877
Target:  5'- cCUCGucuCGCucuccuCGCGCCgCCUggCGCCc -3'
miRNA:   3'- -GAGCu--GCGuauu--GCGCGGaGGA--GCGG- -5'
23647 5' -55.9 NC_005261.1 + 54892 0.66 0.886833
Target:  5'- gUCGGCGCGc-GCGUGCCgcagCgcgcguagcgagcaCUCGCCc -3'
miRNA:   3'- gAGCUGCGUauUGCGCGGa---G--------------GAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 54789 0.66 0.888877
Target:  5'- -aCGGCGCGcccCGcCGCCUCCgcguagGCCa -3'
miRNA:   3'- gaGCUGCGUauuGC-GCGGAGGag----CGG- -5'
23647 5' -55.9 NC_005261.1 + 15732 0.66 0.895542
Target:  5'- -gCGACGgGgccguccGCGCGCaggccgaccgCCUCGCCg -3'
miRNA:   3'- gaGCUGCgUau-----UGCGCGga--------GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 90891 0.66 0.895542
Target:  5'- -gCGACgGCAUGGCGCGgCaggUCUCGgCg -3'
miRNA:   3'- gaGCUG-CGUAUUGCGCgGa--GGAGCgG- -5'
23647 5' -55.9 NC_005261.1 + 52337 0.66 0.919887
Target:  5'- cCUUGGCGCccgcCGCGCUgccgCCggaGCCg -3'
miRNA:   3'- -GAGCUGCGuauuGCGCGGa---GGag-CGG- -5'
23647 5' -55.9 NC_005261.1 + 51367 0.66 0.888877
Target:  5'- -cCGGCGCGgaguACGCGCaggCCgugCGCg -3'
miRNA:   3'- gaGCUGCGUau--UGCGCGga-GGa--GCGg -5'
23647 5' -55.9 NC_005261.1 + 31796 0.66 0.895542
Target:  5'- -gCGGCGCAg--UGCGCCgcgCgCUgGCCu -3'
miRNA:   3'- gaGCUGCGUauuGCGCGGa--G-GAgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.