miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 5' -55.9 NC_005261.1 + 52337 0.66 0.919887
Target:  5'- cCUUGGCGCccgcCGCGCUgccgCCggaGCCg -3'
miRNA:   3'- -GAGCUGCGuauuGCGCGGa---GGag-CGG- -5'
23647 5' -55.9 NC_005261.1 + 46737 0.77 0.355328
Target:  5'- -cCGGCGCGUGcACGUGCCgcagCC-CGCCg -3'
miRNA:   3'- gaGCUGCGUAU-UGCGCGGa---GGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 100053 0.77 0.356114
Target:  5'- gCUCGAgCGCGccgccgccgcccgggGGCGCGCCgcgccCCUCGCCg -3'
miRNA:   3'- -GAGCU-GCGUa--------------UUGCGCGGa----GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 83086 0.76 0.371288
Target:  5'- -cCGGCGCuuccaGCGCCUCCagCGCCg -3'
miRNA:   3'- gaGCUGCGuauugCGCGGAGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 128504 0.76 0.371288
Target:  5'- gCUCGACGCGgcggcgGAgGCaGCCUCCUgGCg -3'
miRNA:   3'- -GAGCUGCGUa-----UUgCG-CGGAGGAgCGg -5'
23647 5' -55.9 NC_005261.1 + 87487 0.76 0.378627
Target:  5'- uUCGGCGCGgccgugcUGGCGCGCaggCgCUCGCCg -3'
miRNA:   3'- gAGCUGCGU-------AUUGCGCGga-G-GAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 32582 0.76 0.387729
Target:  5'- cCUCGucCGCGUccucCGCGuCCUCCUCGUCg -3'
miRNA:   3'- -GAGCu-GCGUAuu--GCGC-GGAGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 83677 0.76 0.396128
Target:  5'- cCUgGGCGCGcAGCGCGCCgCCgaggcggCGCCg -3'
miRNA:   3'- -GAgCUGCGUaUUGCGCGGaGGa------GCGG- -5'
23647 5' -55.9 NC_005261.1 + 101576 0.76 0.396128
Target:  5'- gCUCGGCGC---GCGCcgugGCCUCCgcgcgCGCCg -3'
miRNA:   3'- -GAGCUGCGuauUGCG----CGGAGGa----GCGG- -5'
23647 5' -55.9 NC_005261.1 + 53011 0.77 0.355328
Target:  5'- gUCGGCGCAgcucgccaGCGCUUCCgcggCGCCg -3'
miRNA:   3'- gAGCUGCGUauug----CGCGGAGGa---GCGG- -5'
23647 5' -55.9 NC_005261.1 + 68177 0.77 0.355328
Target:  5'- gCUCGcGCGCGccGCGgGCCcCCUCGCCc -3'
miRNA:   3'- -GAGC-UGCGUauUGCgCGGaGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 133762 0.77 0.347531
Target:  5'- aUCGACGCcc--CGUGCCUCCaCGCCc -3'
miRNA:   3'- gAGCUGCGuauuGCGCGGAGGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 76998 0.81 0.206906
Target:  5'- uCUCGcCGCGcgcGCGCGCCgcccUCCUCGCCg -3'
miRNA:   3'- -GAGCuGCGUau-UGCGCGG----AGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 93097 0.8 0.239542
Target:  5'- gCUCGucCGCAUcGCGCGCgUCgUCGCCg -3'
miRNA:   3'- -GAGCu-GCGUAuUGCGCGgAGgAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 102767 0.79 0.257417
Target:  5'- --gGACGCG-AGCGCGCCcgaggCCUCGCCc -3'
miRNA:   3'- gagCUGCGUaUUGCGCGGa----GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 79755 0.79 0.26993
Target:  5'- uCUCGAUGaac-ACGCGCC-CCUCGCCc -3'
miRNA:   3'- -GAGCUGCguauUGCGCGGaGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 101525 0.78 0.289611
Target:  5'- cCUCGuCGCGgucGCGCGCCgCCUCgGCCg -3'
miRNA:   3'- -GAGCuGCGUau-UGCGCGGaGGAG-CGG- -5'
23647 5' -55.9 NC_005261.1 + 75654 0.78 0.303347
Target:  5'- -cCGGCGCGUuccuGGCGCGCgcgcagaaccucUUCCUCGCCg -3'
miRNA:   3'- gaGCUGCGUA----UUGCGCG------------GAGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 82365 0.77 0.324881
Target:  5'- gUCGGCGCGcgcGCGCGCCgCCagCGCCg -3'
miRNA:   3'- gAGCUGCGUau-UGCGCGGaGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 134096 0.77 0.339857
Target:  5'- uCUCGGCGCGccGGCGCGCgCUCgC-CGCCg -3'
miRNA:   3'- -GAGCUGCGUa-UUGCGCG-GAG-GaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.