miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 5' -55.9 NC_005261.1 + 69 0.67 0.859242
Target:  5'- aUCGGCGCgcgcgggggcgggGUGcgggGCGCGCCcCCgggcccCGCCg -3'
miRNA:   3'- gAGCUGCG-------------UAU----UGCGCGGaGGa-----GCGG- -5'
23647 5' -55.9 NC_005261.1 + 623 0.66 0.914153
Target:  5'- -cCGACGCAggggaUGugGCGgCggCCgccagCGCCg -3'
miRNA:   3'- gaGCUGCGU-----AUugCGCgGa-GGa----GCGG- -5'
23647 5' -55.9 NC_005261.1 + 1311 0.66 0.914153
Target:  5'- -cCGGCgGCGgcACGCG-CUCCgggaCGCCg -3'
miRNA:   3'- gaGCUG-CGUauUGCGCgGAGGa---GCGG- -5'
23647 5' -55.9 NC_005261.1 + 1598 0.71 0.686561
Target:  5'- -gCGGCGCG-GugGCugGCCgCCUCGCCc -3'
miRNA:   3'- gaGCUGCGUaUugCG--CGGaGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 1839 0.72 0.615275
Target:  5'- cCUCGGCGCGcgcgAAgGCGCCgggcCCgaagacgCGCCg -3'
miRNA:   3'- -GAGCUGCGUa---UUgCGCGGa---GGa------GCGG- -5'
23647 5' -55.9 NC_005261.1 + 2126 0.67 0.852263
Target:  5'- -gCG-CGCcgAGCGCGCUcacgUCCggcgCGCCc -3'
miRNA:   3'- gaGCuGCGuaUUGCGCGG----AGGa---GCGG- -5'
23647 5' -55.9 NC_005261.1 + 2270 0.68 0.810705
Target:  5'- gCUCGuccuCGCcgGGCgGCGCCgCCagCGCCu -3'
miRNA:   3'- -GAGCu---GCGuaUUG-CGCGGaGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 3006 0.67 0.859242
Target:  5'- -cCGGCGCcgGggcucccGCGgGCCUCCcCGUCc -3'
miRNA:   3'- gaGCUGCGuaU-------UGCgCGGAGGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 3348 0.73 0.564565
Target:  5'- -gCGGCGCccGGCGCGCCggCCUUcaggGCCg -3'
miRNA:   3'- gaGCUGCGuaUUGCGCGGa-GGAG----CGG- -5'
23647 5' -55.9 NC_005261.1 + 3541 0.7 0.706652
Target:  5'- cCUCGGCGCGcAGCGCGgCgggcgCggCGCCg -3'
miRNA:   3'- -GAGCUGCGUaUUGCGCgGa----GgaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 3747 0.75 0.458059
Target:  5'- -gCGGCGCAccGCGcCGCCUCUagCGCCu -3'
miRNA:   3'- gaGCUGCGUauUGC-GCGGAGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 3903 0.71 0.635698
Target:  5'- -gCGGCGCGggcgccCGCGCCgCCggCGCCg -3'
miRNA:   3'- gaGCUGCGUauu---GCGCGGaGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 4311 0.74 0.486143
Target:  5'- -cCGcCGCGUAGCGCGCggccgCCUCGCg -3'
miRNA:   3'- gaGCuGCGUAUUGCGCGga---GGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 4410 0.73 0.554538
Target:  5'- -gCGGCGCGcUGcCGgGCCaggCCUCGCCg -3'
miRNA:   3'- gaGCUGCGU-AUuGCgCGGa--GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 5139 0.69 0.792898
Target:  5'- -cCGGCGCuc-GCGCGCCUCg--GCCc -3'
miRNA:   3'- gaGCUGCGuauUGCGCGGAGgagCGG- -5'
23647 5' -55.9 NC_005261.1 + 5583 0.67 0.874874
Target:  5'- --gGGCGCcgAGgGCGCCcgCCUCgagGCCc -3'
miRNA:   3'- gagCUGCGuaUUgCGCGGa-GGAG---CGG- -5'
23647 5' -55.9 NC_005261.1 + 7901 0.67 0.867546
Target:  5'- -cCGGCGCGgcgccaccagAugGCGCCugagcuccauccUgCUCGCCg -3'
miRNA:   3'- gaGCUGCGUa---------UugCGCGG------------AgGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 8422 0.69 0.777304
Target:  5'- -aCGACGCucacggccacagacCGCGCCcCCUCGCg -3'
miRNA:   3'- gaGCUGCGuauu----------GCGCGGaGGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 10287 0.76 0.404642
Target:  5'- -cUGGCGCcccGACGCGCagcgCCUCGCCg -3'
miRNA:   3'- gaGCUGCGua-UUGCGCGga--GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 10538 0.66 0.901979
Target:  5'- gCUCGcuguCGCccccGGCGCGCCUgCCggGCCc -3'
miRNA:   3'- -GAGCu---GCGua--UUGCGCGGA-GGagCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.