miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 5' -55.9 NC_005261.1 + 137752 0.67 0.859242
Target:  5'- aUCGGCGCgcgcgggggcgggGUGcgggGCGCGCCcCCgggcccCGCCg -3'
miRNA:   3'- gAGCUGCG-------------UAU----UGCGCGGaGGa-----GCGG- -5'
23647 5' -55.9 NC_005261.1 + 135739 0.73 0.554538
Target:  5'- -gUGAUGC-UGGCGCGCCUCa--GCCg -3'
miRNA:   3'- gaGCUGCGuAUUGCGCGGAGgagCGG- -5'
23647 5' -55.9 NC_005261.1 + 135685 0.67 0.844321
Target:  5'- gCUCuGCGCc--GCGCGgCggcuaagCCUCGCCa -3'
miRNA:   3'- -GAGcUGCGuauUGCGCgGa------GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 135472 0.69 0.759436
Target:  5'- cCUCGuacuGCGCGgcgagaaccugaugGACGCGCUggCCUCaGCCg -3'
miRNA:   3'- -GAGC----UGCGUa-------------UUGCGCGGa-GGAG-CGG- -5'
23647 5' -55.9 NC_005261.1 + 134535 0.66 0.914153
Target:  5'- gCUgGGCGCgcagacGUGAC-CGCC-CCUUGCUg -3'
miRNA:   3'- -GAgCUGCG------UAUUGcGCGGaGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 134096 0.77 0.339857
Target:  5'- uCUCGGCGCGccGGCGCGCgCUCgC-CGCCg -3'
miRNA:   3'- -GAGCUGCGUa-UUGCGCG-GAG-GaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 133973 0.66 0.901979
Target:  5'- uUUGcCGCAacGACGcCGaCCUCCUCaGCCc -3'
miRNA:   3'- gAGCuGCGUa-UUGC-GC-GGAGGAG-CGG- -5'
23647 5' -55.9 NC_005261.1 + 133835 0.66 0.914153
Target:  5'- -gCGGcCGCGU-GCGCGCCguggCCggCGCg -3'
miRNA:   3'- gaGCU-GCGUAuUGCGCGGa---GGa-GCGg -5'
23647 5' -55.9 NC_005261.1 + 133762 0.77 0.347531
Target:  5'- aUCGACGCcc--CGUGCCUCCaCGCCc -3'
miRNA:   3'- gAGCUGCGuauuGCGCGGAGGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 133639 0.68 0.810705
Target:  5'- gCUCGccgcgccgcuGCGCG-AGCGCugcgugcucGCCUCCggCGCCa -3'
miRNA:   3'- -GAGC----------UGCGUaUUGCG---------CGGAGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 133127 0.71 0.634676
Target:  5'- -aCGGCGU---GCGCGUCUCCcugcggugcgcgcUCGCCg -3'
miRNA:   3'- gaGCUGCGuauUGCGCGGAGG-------------AGCGG- -5'
23647 5' -55.9 NC_005261.1 + 132962 0.68 0.801878
Target:  5'- -cCGACGU--GGC-CGCCUUCgUCGCCg -3'
miRNA:   3'- gaGCUGCGuaUUGcGCGGAGG-AGCGG- -5'
23647 5' -55.9 NC_005261.1 + 132911 0.69 0.765126
Target:  5'- -gCGGCGCcgAGCgGCGgCUCCU-GCCc -3'
miRNA:   3'- gaGCUGCGuaUUG-CGCgGAGGAgCGG- -5'
23647 5' -55.9 NC_005261.1 + 132459 0.76 0.413272
Target:  5'- cCUCGGcCGCccucCGCGCCggcagcgCCUCGCCg -3'
miRNA:   3'- -GAGCU-GCGuauuGCGCGGa------GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 131817 0.67 0.874874
Target:  5'- -aCGGCGCGccgccgcuUGACGCGgCgCC-CGCCu -3'
miRNA:   3'- gaGCUGCGU--------AUUGCGCgGaGGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 131766 0.73 0.524799
Target:  5'- -cCGGCGCGgcgGGCGCGCCgcugggCCccgaCGCCg -3'
miRNA:   3'- gaGCUGCGUa--UUGCGCGGa-----GGa---GCGG- -5'
23647 5' -55.9 NC_005261.1 + 131437 0.7 0.696633
Target:  5'- -cCGGCGCcccccuUGCGCCgcgCCUCGCg -3'
miRNA:   3'- gaGCUGCGuauu--GCGCGGa--GGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 131227 0.67 0.873425
Target:  5'- -aCGugGCc--GCGCGCaucgaggcugaCCUCGCCg -3'
miRNA:   3'- gaGCugCGuauUGCGCGga---------GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 131157 0.66 0.895542
Target:  5'- -gCGGCGCu---CGcCGCCUUCUgcUGCCg -3'
miRNA:   3'- gaGCUGCGuauuGC-GCGGAGGA--GCGG- -5'
23647 5' -55.9 NC_005261.1 + 130849 0.67 0.881986
Target:  5'- cCUUG-CGC---GCGCGCCcggCCgggCGCCg -3'
miRNA:   3'- -GAGCuGCGuauUGCGCGGa--GGa--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.