Results 1 - 20 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23651 | 5' | -57.8 | NC_005261.1 | + | 44206 | 0.66 | 0.786499 |
Target: 5'- -gCGAGCUgcaGG-CGGCCcgGGAGCgCGCg -3' miRNA: 3'- caGCUUGAa--CCgGUCGG--UCUCGgGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 104372 | 0.66 | 0.795607 |
Target: 5'- --aGAACagccGCCGGCCGGAGgCCGa -3' miRNA: 3'- cagCUUGaac-CGGUCGGUCUCgGGCg -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 101705 | 0.66 | 0.777251 |
Target: 5'- gGUCGAagcGCUccagcUGcGCCAGCgcgcccgcgauCAGGGCCuCGCu -3' miRNA: 3'- -CAGCU---UGA-----AC-CGGUCG-----------GUCUCGG-GCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 95794 | 0.66 | 0.795607 |
Target: 5'- -gCGcGCUgcuagccgGcGCCGGCgGGGGCUCGCg -3' miRNA: 3'- caGCuUGAa-------C-CGGUCGgUCUCGGGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 33699 | 0.66 | 0.780967 |
Target: 5'- gGUCGcGCggGGCCcGCUgcacgaggggcggugGGGGCCUGCc -3' miRNA: 3'- -CAGCuUGaaCCGGuCGG---------------UCUCGGGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 59313 | 0.66 | 0.786499 |
Target: 5'- cGUCaaaccACUcGGCCAGCguGcgcGCCCGCc -3' miRNA: 3'- -CAGcu---UGAaCCGGUCGguCu--CGGGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 105545 | 0.66 | 0.786499 |
Target: 5'- cUCGGGC-UGGCCGcacgcGCgCAGGGCCagguaCGCg -3' miRNA: 3'- cAGCUUGaACCGGU-----CG-GUCUCGG-----GCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 2992 | 0.66 | 0.795607 |
Target: 5'- cUCGGcCUggcGGCCcggcGCCGGGGCucCCGCg -3' miRNA: 3'- cAGCUuGAa--CCGGu---CGGUCUCG--GGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 98584 | 0.66 | 0.786499 |
Target: 5'- -gCGGGCUcgGGCgAGUaggCGGcGCCCGCa -3' miRNA: 3'- caGCUUGAa-CCGgUCG---GUCuCGGGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 62806 | 0.66 | 0.78558 |
Target: 5'- uUCGGGCUgGGCCAuaucgccGCgCGGGGCaCCGg -3' miRNA: 3'- cAGCUUGAaCCGGU-------CG-GUCUCG-GGCg -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 42636 | 0.66 | 0.795607 |
Target: 5'- --gGGACUcGGCC-GCCGcGGCCgCGCg -3' miRNA: 3'- cagCUUGAaCCGGuCGGUcUCGG-GCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 81453 | 0.66 | 0.786499 |
Target: 5'- -gCGGGCgccGCCAGCagCAGGGCCCa- -3' miRNA: 3'- caGCUUGaacCGGUCG--GUCUCGGGcg -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 83560 | 0.66 | 0.795607 |
Target: 5'- --aGAACUcggcgGGCguGCCcgcGGcGCCCGCg -3' miRNA: 3'- cagCUUGAa----CCGguCGG---UCuCGGGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 19669 | 0.66 | 0.777251 |
Target: 5'- cUUGAccACgUUGGCgUGGuCCAGGGUCCGCa -3' miRNA: 3'- cAGCU--UG-AACCG-GUC-GGUCUCGGGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 5171 | 0.66 | 0.786499 |
Target: 5'- cGUCGAGCagGGCCGGguccuccuCCGG-GCCCc- -3' miRNA: 3'- -CAGCUUGaaCCGGUC--------GGUCuCGGGcg -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 38963 | 0.66 | 0.777251 |
Target: 5'- -gCGGGCU--GCgCAGCaacaAGAGCCUGCa -3' miRNA: 3'- caGCUUGAacCG-GUCGg---UCUCGGGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 41038 | 0.66 | 0.773516 |
Target: 5'- cGUCGuuguccccgGcGCCGGCCucAGAGCCgGCg -3' miRNA: 3'- -CAGCuugaa----C-CGGUCGG--UCUCGGgCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 64757 | 0.66 | 0.82201 |
Target: 5'- --gGAAgUUGGCCucGGCC--AGCUCGCg -3' miRNA: 3'- cagCUUgAACCGG--UCGGucUCGGGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 64317 | 0.66 | 0.77632 |
Target: 5'- cGUCGc----GGCCGuagccgugcccgcGUCAGGGCCCGCc -3' miRNA: 3'- -CAGCuugaaCCGGU-------------CGGUCUCGGGCG- -5' |
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23651 | 5' | -57.8 | NC_005261.1 | + | 88475 | 0.66 | 0.777251 |
Target: 5'- -gCGGGCcguGCCGcGCCGGAGCgCGCc -3' miRNA: 3'- caGCUUGaacCGGU-CGGUCUCGgGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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