miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23651 5' -57.8 NC_005261.1 + 2459 0.67 0.739053
Target:  5'- gGUCGAagGCgaGcGCCGggcGCCAGGGCUCGg -3'
miRNA:   3'- -CAGCU--UGaaC-CGGU---CGGUCUCGGGCg -5'
23651 5' -57.8 NC_005261.1 + 2609 0.67 0.758376
Target:  5'- cGUCGGcgGCggGGCC-GCCgggcggcauGGGGCCCaGCa -3'
miRNA:   3'- -CAGCU--UGaaCCGGuCGG---------UCUCGGG-CG- -5'
23651 5' -57.8 NC_005261.1 + 2832 0.68 0.67914
Target:  5'- -cCGAGCUcGGgCGG-CAGGGCCgGCg -3'
miRNA:   3'- caGCUUGAaCCgGUCgGUCUCGGgCG- -5'
23651 5' -57.8 NC_005261.1 + 2951 0.69 0.658763
Target:  5'- -cCGGGCUccGGcCCGGaCUAGGGCCCGg -3'
miRNA:   3'- caGCUUGAa-CC-GGUC-GGUCUCGGGCg -5'
23651 5' -57.8 NC_005261.1 + 2992 0.66 0.795607
Target:  5'- cUCGGcCUggcGGCCcggcGCCGGGGCucCCGCg -3'
miRNA:   3'- cAGCUuGAa--CCGGu---CGGUCUCG--GGCG- -5'
23651 5' -57.8 NC_005261.1 + 3378 0.67 0.767874
Target:  5'- -gCGAGCgcGGCC-GCCAGccgcGCCgGCa -3'
miRNA:   3'- caGCUUGaaCCGGuCGGUCu---CGGgCG- -5'
23651 5' -57.8 NC_005261.1 + 3658 0.7 0.597379
Target:  5'- cGUCugGAGCgcaGGCCgcGGCCGGcaggccgcGGCCCGCu -3'
miRNA:   3'- -CAG--CUUGaa-CCGG--UCGGUC--------UCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 4119 0.67 0.729247
Target:  5'- -aCGAGCUgUGGCC--CCGGcAGCCCuGCa -3'
miRNA:   3'- caGCUUGA-ACCGGucGGUC-UCGGG-CG- -5'
23651 5' -57.8 NC_005261.1 + 5127 0.67 0.729247
Target:  5'- -gCGGGC--GGCCcGCCGGcGCUCGCg -3'
miRNA:   3'- caGCUUGaaCCGGuCGGUCuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 5171 0.66 0.786499
Target:  5'- cGUCGAGCagGGCCGGguccuccuCCGG-GCCCc- -3'
miRNA:   3'- -CAGCUUGaaCCGGUC--------GGUCuCGGGcg -5'
23651 5' -57.8 NC_005261.1 + 5243 0.84 0.088589
Target:  5'- gGUCGAGCgUGGCCGGCUcGuGCCCGCc -3'
miRNA:   3'- -CAGCUUGaACCGGUCGGuCuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 5894 0.71 0.526012
Target:  5'- cUCGGcuggcuaGCUcGGCCGGCCGGcuggcuAGCUCGCu -3'
miRNA:   3'- cAGCU-------UGAaCCGGUCGGUC------UCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 5932 0.67 0.738077
Target:  5'- cUCGAcggcaagGC-UGGCUAGCUAG-GCCgGCu -3'
miRNA:   3'- cAGCU-------UGaACCGGUCGGUCuCGGgCG- -5'
23651 5' -57.8 NC_005261.1 + 6437 0.76 0.277274
Target:  5'- --aGGGCgguccgggGGCCGGCCGGGcuGCCCGCa -3'
miRNA:   3'- cagCUUGaa------CCGGUCGGUCU--CGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 11871 0.67 0.758376
Target:  5'- cGUC-AGCUgcggGGCgAGCCc--GCCCGCa -3'
miRNA:   3'- -CAGcUUGAa---CCGgUCGGucuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 11911 0.72 0.469255
Target:  5'- -gCGGGCccGGcCCGGCCGGcggcugcggcGGCCCGCg -3'
miRNA:   3'- caGCUUGaaCC-GGUCGGUC----------UCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 12040 0.67 0.748766
Target:  5'- cUCGAGCc---CCAGCCGGAGCaCGUa -3'
miRNA:   3'- cAGCUUGaaccGGUCGGUCUCGgGCG- -5'
23651 5' -57.8 NC_005261.1 + 12332 0.67 0.719357
Target:  5'- -gCGcGCUUGGCCGGCgCGGccGCcgCCGCg -3'
miRNA:   3'- caGCuUGAACCGGUCG-GUCu-CG--GGCG- -5'
23651 5' -57.8 NC_005261.1 + 12720 0.68 0.67914
Target:  5'- cUCGGGCgcgcgGGCCcGCCGGcccccugggcgGGCCCGg -3'
miRNA:   3'- cAGCUUGaa---CCGGuCGGUC-----------UCGGGCg -5'
23651 5' -57.8 NC_005261.1 + 14020 0.69 0.617818
Target:  5'- -gUGAGCUcugcgaUGGCCAGCgGGgccaugcgagcGGUCCGCa -3'
miRNA:   3'- caGCUUGA------ACCGGUCGgUC-----------UCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.