miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23651 5' -57.8 NC_005261.1 + 64757 0.66 0.82201
Target:  5'- --gGAAgUUGGCCucGGCC--AGCUCGCg -3'
miRNA:   3'- cagCUUgAACCGG--UCGGucUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 38700 0.75 0.297433
Target:  5'- -cCGGGCccaaGCCGGCCAG-GCCCGCg -3'
miRNA:   3'- caGCUUGaac-CGGUCGGUCuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 52349 0.75 0.304401
Target:  5'- -cCGcGCUgccGCCggAGCCGGAGCCCGCg -3'
miRNA:   3'- caGCuUGAac-CGG--UCGGUCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 27511 0.75 0.318711
Target:  5'- gGUCuGGGCg-GGCCAGCUGG-GCCCGCc -3'
miRNA:   3'- -CAG-CUUGaaCCGGUCGGUCuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 101946 0.75 0.318711
Target:  5'- -aCGuACUUGGCgAGCCGGGGCacggCCGCc -3'
miRNA:   3'- caGCuUGAACCGgUCGGUCUCG----GGCG- -5'
23651 5' -57.8 NC_005261.1 + 134038 0.75 0.326053
Target:  5'- cUCGcGGCcaUGGCCGGCCAcGGCCCGUa -3'
miRNA:   3'- cAGC-UUGa-ACCGGUCGGUcUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 71415 0.75 0.33352
Target:  5'- cGUCcGGCgcggGGcCCGGCCcGGGCCCGCg -3'
miRNA:   3'- -CAGcUUGaa--CC-GGUCGGuCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 129693 0.75 0.33352
Target:  5'- cUCGGGCcggGGCCggGGCCGGAggcagGCCCGCc -3'
miRNA:   3'- cAGCUUGaa-CCGG--UCGGUCU-----CGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 94701 0.74 0.341111
Target:  5'- --aGGACgUGGCCgAGCUGGAGCgCCGCu -3'
miRNA:   3'- cagCUUGaACCGG-UCGGUCUCG-GGCG- -5'
23651 5' -57.8 NC_005261.1 + 58074 0.75 0.297433
Target:  5'- -gCGGAC--GGCgGcGCCAGGGCCCGCg -3'
miRNA:   3'- caGCUUGaaCCGgU-CGGUCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 47092 0.76 0.28387
Target:  5'- -cCGAA---GGCgGGCCAGAGCCCGUc -3'
miRNA:   3'- caGCUUgaaCCGgUCGGUCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 72478 0.76 0.28387
Target:  5'- -gCGAGCgcGGCCAGCgccaGGAGCgCCGCg -3'
miRNA:   3'- caGCUUGaaCCGGUCGg---UCUCG-GGCG- -5'
23651 5' -57.8 NC_005261.1 + 5243 0.84 0.088589
Target:  5'- gGUCGAGCgUGGCCGGCUcGuGCCCGCc -3'
miRNA:   3'- -CAGCUUGaACCGGUCGGuCuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 36986 0.8 0.145673
Target:  5'- -gCGGGCU---CCAGCCGGAGCCCGCg -3'
miRNA:   3'- caGCUUGAaccGGUCGGUCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 66039 0.79 0.174133
Target:  5'- aGUCGGcgGCcacGGCCAGCCccGGGCCCGCg -3'
miRNA:   3'- -CAGCU--UGaa-CCGGUCGGu-CUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 66350 0.77 0.24025
Target:  5'- -gCGAuCUUGGCCAGCgC-GAGCUCGCg -3'
miRNA:   3'- caGCUuGAACCGGUCG-GuCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 79868 0.77 0.252111
Target:  5'- gGUUGAGCUUGGCCgccucGGCCcacAGGGCgCGCu -3'
miRNA:   3'- -CAGCUUGAACCGG-----UCGG---UCUCGgGCG- -5'
23651 5' -57.8 NC_005261.1 + 38616 0.76 0.26445
Target:  5'- --gGGugUUGGCCgcGGCC-GAGCCCGCc -3'
miRNA:   3'- cagCUugAACCGG--UCGGuCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 6437 0.76 0.277274
Target:  5'- --aGGGCgguccgggGGCCGGCCGGGcuGCCCGCa -3'
miRNA:   3'- cagCUUGaa------CCGGUCGGUCU--CGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 118022 0.76 0.277274
Target:  5'- uGUCGGACgcacgcggGGcCCGGCCGcGAcGCCCGCg -3'
miRNA:   3'- -CAGCUUGaa------CC-GGUCGGU-CU-CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.