miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 83851 0.66 0.820853
Target:  5'- cGCgGCCcCGCUGgGCUGggccgGgCCGGa -3'
miRNA:   3'- aCGaCGGcGUGAUgCGACaa---CgGGCC- -5'
23653 5' -57.9 NC_005261.1 + 53110 0.66 0.820853
Target:  5'- cGCcGCgGCGCUGCGCgcc-GCCaacaGGg -3'
miRNA:   3'- aCGaCGgCGUGAUGCGacaaCGGg---CC- -5'
23653 5' -57.9 NC_005261.1 + 110373 0.66 0.820853
Target:  5'- gGCgaccGCCGCAUgGCGCUGcgGCUgGa -3'
miRNA:   3'- aCGa---CGGCGUGaUGCGACaaCGGgCc -5'
23653 5' -57.9 NC_005261.1 + 96660 0.66 0.820853
Target:  5'- aGCaGCaGCGCcagaACGCUGaUGCCCGu -3'
miRNA:   3'- aCGaCGgCGUGa---UGCGACaACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 5283 0.66 0.820853
Target:  5'- gGCcgGCCGCGgUGCGCgcgGgucCCUGGa -3'
miRNA:   3'- aCGa-CGGCGUgAUGCGa--CaacGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 84785 0.66 0.820853
Target:  5'- aGUUGCC-CGCcuggaagACGCgguUGUUGCCCGn -3'
miRNA:   3'- aCGACGGcGUGa------UGCG---ACAACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 30888 0.66 0.820853
Target:  5'- -cCUGCCGCccgaGCUcGgGCUGgggccGCCCGGc -3'
miRNA:   3'- acGACGGCG----UGA-UgCGACaa---CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 56859 0.66 0.820853
Target:  5'- cUGgUGCCGCugaucGCGCUGgcGCUCGc -3'
miRNA:   3'- -ACgACGGCGuga--UGCGACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 14981 0.66 0.820853
Target:  5'- cUGCgcgGCCGCGCcggcCGC----GCCCGGa -3'
miRNA:   3'- -ACGa--CGGCGUGau--GCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 62299 0.66 0.820853
Target:  5'- gGC-GCCGCGCggGCGCgcgGcgGCCCc- -3'
miRNA:   3'- aCGaCGGCGUGa-UGCGa--CaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 128812 0.66 0.820853
Target:  5'- gGCgggGCuCGCGCUGCGgCUGacGCUCGc -3'
miRNA:   3'- aCGa--CG-GCGUGAUGC-GACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 67324 0.66 0.818281
Target:  5'- cGCcGCCGCGCUcagccgcaggaacaGCGCcgg-GCCCGc -3'
miRNA:   3'- aCGaCGGCGUGA--------------UGCGacaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 1706 0.66 0.812222
Target:  5'- cGCUGCCgGUACUcGCGCgGcgGCaCGGg -3'
miRNA:   3'- aCGACGG-CGUGA-UGCGaCaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 130584 0.66 0.812222
Target:  5'- cGCcGCCGCGCggccccGCGCcug-GCCCGu -3'
miRNA:   3'- aCGaCGGCGUGa-----UGCGacaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 94847 0.66 0.812222
Target:  5'- cGCgccugGCCucgGCGCUcGCGCacg-GCCCGGg -3'
miRNA:   3'- aCGa----CGG---CGUGA-UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 111006 0.66 0.812222
Target:  5'- cGCUGCCGCACgacuCGCcgcggGUcaccUGCCg-- -3'
miRNA:   3'- aCGACGGCGUGau--GCGa----CA----ACGGgcc -5'
23653 5' -57.9 NC_005261.1 + 62221 0.66 0.812222
Target:  5'- cGCgGCCGCGuCUGCGCccucgcgGUgcugcacGUCCGGc -3'
miRNA:   3'- aCGaCGGCGU-GAUGCGa------CAa------CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 7641 0.66 0.812222
Target:  5'- cGCUGCCGCgucuGCUuuuCGCUucaagcgGCCgCGGc -3'
miRNA:   3'- aCGACGGCG----UGAu--GCGAcaa----CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 102534 0.66 0.812222
Target:  5'- aGCUugGCCGC-CUGCgGCcccaGgcGCCCGGc -3'
miRNA:   3'- aCGA--CGGCGuGAUG-CGa---CaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 106585 0.66 0.803429
Target:  5'- gGCcGCCGCGCgGCGCUccu-CCUGGa -3'
miRNA:   3'- aCGaCGGCGUGaUGCGAcaacGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.