miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 1706 0.66 0.812222
Target:  5'- cGCUGCCgGUACUcGCGCgGcgGCaCGGg -3'
miRNA:   3'- aCGACGG-CGUGA-UGCGaCaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 2665 0.67 0.75732
Target:  5'- gGCUcCCGC-C-GCGCUGggGaCCCGGc -3'
miRNA:   3'- aCGAcGGCGuGaUGCGACaaC-GGGCC- -5'
23653 5' -57.9 NC_005261.1 + 3598 0.69 0.657993
Target:  5'- cGCggGCCGCGCcaaGCaGCUcaGcUGCCCGGa -3'
miRNA:   3'- aCGa-CGGCGUGa--UG-CGA--CaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 3810 0.72 0.450714
Target:  5'- cGCaGCCGCucgcGCGCUGccgcggGCCCGGg -3'
miRNA:   3'- aCGaCGGCGuga-UGCGACaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 4151 0.67 0.776156
Target:  5'- cGCUGCagcagGCGCgccaGCUGcagGUCCGGg -3'
miRNA:   3'- aCGACGg----CGUGaug-CGACaa-CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 4962 0.67 0.75732
Target:  5'- cGCccccgGCCGCG--GCGUccucUGggGCCCGGa -3'
miRNA:   3'- aCGa----CGGCGUgaUGCG----ACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 5133 0.67 0.776156
Target:  5'- gGCccGCCgGCGCUcGCGCgccucgGCCCGGc -3'
miRNA:   3'- aCGa-CGG-CGUGA-UGCGacaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 5283 0.66 0.820853
Target:  5'- gGCcgGCCGCGgUGCGCgcgGgucCCUGGa -3'
miRNA:   3'- aCGa-CGGCGUgAUGCGa--CaacGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 7641 0.66 0.812222
Target:  5'- cGCUGCCGCgucuGCUuuuCGCUucaagcgGCCgCGGc -3'
miRNA:   3'- aCGACGGCG----UGAu--GCGAcaa----CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 9374 0.66 0.794481
Target:  5'- gGgaGCCGCAUUGCGagGUgaGCUCGGc -3'
miRNA:   3'- aCgaCGGCGUGAUGCgaCAa-CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 10518 0.7 0.596826
Target:  5'- cGCUGCgggccccgcggCGCGCU-CGCUGUcGCCCc- -3'
miRNA:   3'- aCGACG-----------GCGUGAuGCGACAaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 13048 0.67 0.747732
Target:  5'- cGCgggGCCGCGC-GCGCcccUGCCgGGc -3'
miRNA:   3'- aCGa--CGGCGUGaUGCGacaACGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 13579 0.69 0.627394
Target:  5'- cUGCaGCCGCACcgagaGCGUgaaggaGUcGCCCGGg -3'
miRNA:   3'- -ACGaCGGCGUGa----UGCGa-----CAaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 14981 0.66 0.820853
Target:  5'- cUGCgcgGCCGCGCcggcCGC----GCCCGGa -3'
miRNA:   3'- -ACGa--CGGCGUGau--GCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 20711 0.69 0.606999
Target:  5'- cUGCUGaacuCGgGCcGCGCUGggGCUCGGc -3'
miRNA:   3'- -ACGACg---GCgUGaUGCGACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 21198 0.7 0.556459
Target:  5'- cGCgGCCGCGg-ACGCUGgc-CCCGGc -3'
miRNA:   3'- aCGaCGGCGUgaUGCGACaacGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 21656 0.73 0.386936
Target:  5'- cGCUGCCGCACcGCcgguacgugcuccgGCUGggGCUCGa -3'
miRNA:   3'- aCGACGGCGUGaUG--------------CGACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 21749 0.66 0.803429
Target:  5'- gGCUGCUGCGCcuggaGCGCgc--GCCgGGc -3'
miRNA:   3'- aCGACGGCGUGa----UGCGacaaCGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 22819 0.71 0.526706
Target:  5'- cGCUGCCGC-CgcCGCcGUUGgCgCCGGg -3'
miRNA:   3'- aCGACGGCGuGauGCGaCAAC-G-GGCC- -5'
23653 5' -57.9 NC_005261.1 + 28259 0.67 0.728262
Target:  5'- gGCUGCuCGgGgggGCGCUGUUGCCg-- -3'
miRNA:   3'- aCGACG-GCgUga-UGCGACAACGGgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.