miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 134567 0.7 0.596826
Target:  5'- gGCggcGCCGCgGCUGCGCagGgcggGCCUGGc -3'
miRNA:   3'- aCGa--CGGCG-UGAUGCGa-Caa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 134498 0.71 0.526706
Target:  5'- cGCUGCUGCACUACGagcacaGCCUGc -3'
miRNA:   3'- aCGACGGCGUGAUGCgacaa-CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 134028 0.66 0.785387
Target:  5'- cGCcGCCGCGCU-CGCggccaUGgCCGGc -3'
miRNA:   3'- aCGaCGGCGUGAuGCGaca--ACgGGCC- -5'
23653 5' -57.9 NC_005261.1 + 133831 0.66 0.803429
Target:  5'- cUGCgcgGCCGCG-UGCGCgccgUGgCCGGc -3'
miRNA:   3'- -ACGa--CGGCGUgAUGCGaca-ACgGGCC- -5'
23653 5' -57.9 NC_005261.1 + 133647 0.69 0.637601
Target:  5'- cGCcGCUGCGCgaGCGCUGcgUGCUCGc -3'
miRNA:   3'- aCGaCGGCGUGa-UGCGACa-ACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 133586 0.7 0.546482
Target:  5'- -cUUGCCGCGCUgGCGCUGcucacgGCCCa- -3'
miRNA:   3'- acGACGGCGUGA-UGCGACaa----CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 133356 0.72 0.491826
Target:  5'- cGCUGCCGCGCagggcuucggcugccUGCGCgcg-GCCCa- -3'
miRNA:   3'- aCGACGGCGUG---------------AUGCGacaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 132372 0.78 0.202979
Target:  5'- cGCUcGCCGCGCUcgcgGCGCUGUUcCCCGa -3'
miRNA:   3'- aCGA-CGGCGUGA----UGCGACAAcGGGCc -5'
23653 5' -57.9 NC_005261.1 + 131174 0.72 0.450714
Target:  5'- cUGCUGCCGCagcgGCUACGCccGcgGCgCGGu -3'
miRNA:   3'- -ACGACGGCG----UGAUGCGa-CaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 130584 0.66 0.812222
Target:  5'- cGCcGCCGCGCggccccGCGCcug-GCCCGu -3'
miRNA:   3'- aCGaCGGCGUGa-----UGCGacaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 130033 0.67 0.766798
Target:  5'- aUGCUGgCGuCACUacACGCg---GCCUGGu -3'
miRNA:   3'- -ACGACgGC-GUGA--UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 129308 0.67 0.738043
Target:  5'- gGCgccCCGCGcCUGCGCUGgcGCCgCGu -3'
miRNA:   3'- aCGac-GGCGU-GAUGCGACaaCGG-GCc -5'
23653 5' -57.9 NC_005261.1 + 129055 0.67 0.766798
Target:  5'- cGCUGCCGCGCccUACGUguUUGgUCGa -3'
miRNA:   3'- aCGACGGCGUG--AUGCGacAACgGGCc -5'
23653 5' -57.9 NC_005261.1 + 128812 0.66 0.820853
Target:  5'- gGCgggGCuCGCGCUGCGgCUGacGCUCGc -3'
miRNA:   3'- aCGa--CG-GCGUGAUGC-GACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 128543 0.73 0.389438
Target:  5'- gUGCUGCUGCgaacccgacucGCUgGCGCucUGggGCCCGGu -3'
miRNA:   3'- -ACGACGGCG-----------UGA-UGCG--ACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 127881 0.69 0.606999
Target:  5'- gGgaGUCGCGCcgGCGCccGUcggGCCCGGg -3'
miRNA:   3'- aCgaCGGCGUGa-UGCGa-CAa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 127756 0.66 0.785387
Target:  5'- aGCggGCCGCgGCggGCGCgaagacGCCCGGc -3'
miRNA:   3'- aCGa-CGGCG-UGa-UGCGacaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 127691 0.69 0.657993
Target:  5'- cGCUGCCccgGCggcgccggaggaGCUGCGCgUGgccUGCCUGGu -3'
miRNA:   3'- aCGACGG---CG------------UGAUGCG-ACa--ACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 126502 0.7 0.546482
Target:  5'- aGCUGCCGCAggcgguCUGC-CUGggcGCCCGc -3'
miRNA:   3'- aCGACGGCGU------GAUGcGACaa-CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 124933 0.73 0.389438
Target:  5'- gGCUccGCCGCGC-GCGCUGUgccggcGCCCuGGa -3'
miRNA:   3'- aCGA--CGGCGUGaUGCGACAa-----CGGG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.