miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23658 3' -55.5 NC_005261.1 + 14118 0.66 0.913466
Target:  5'- gGGCgUCGG-CUCGggCGGUGgGCAGUCGCu -3'
miRNA:   3'- -UCG-GGCCgGAGCa-GCUAC-UGUUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 4423 0.66 0.913466
Target:  5'- gGGCCaGGCCUCGcCGGagGGC-GUCAg -3'
miRNA:   3'- -UCGGgCCGGAGCaGCUa-CUGuUAGUg -5'
23658 3' -55.5 NC_005261.1 + 23165 0.66 0.913466
Target:  5'- gGGCCCGGCaggcgCGcCGggGGCGAcaGCg -3'
miRNA:   3'- -UCGGGCCGga---GCaGCuaCUGUUagUG- -5'
23658 3' -55.5 NC_005261.1 + 107908 0.66 0.913466
Target:  5'- cGGCCgCGGCCUCGgccaCGAguGCcgcgcgGAUCGCc -3'
miRNA:   3'- -UCGG-GCCGGAGCa---GCUacUG------UUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 21677 0.66 0.91227
Target:  5'- uGCuCCGGCUggggcucgagcgCGUCGcgGGCGAgcgcuUCACg -3'
miRNA:   3'- uCG-GGCCGGa-----------GCAGCuaCUGUU-----AGUG- -5'
23658 3' -55.5 NC_005261.1 + 12752 0.66 0.907386
Target:  5'- gGGCCCGGCgaggUCGUaGgcGGCGGUgGCg -3'
miRNA:   3'- -UCGGGCCGg---AGCAgCuaCUGUUAgUG- -5'
23658 3' -55.5 NC_005261.1 + 88596 0.66 0.907386
Target:  5'- aGGCCCGGCC-CGgCGgcGccACGGUCGu -3'
miRNA:   3'- -UCGGGCCGGaGCaGCuaC--UGUUAGUg -5'
23658 3' -55.5 NC_005261.1 + 106050 0.66 0.903622
Target:  5'- uGCCCGGCCcuagcgccgCGUCGuacugguUGcggaaccccacagcgGCGAUCGCg -3'
miRNA:   3'- uCGGGCCGGa--------GCAGCu------AC---------------UGUUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 128859 0.66 0.901065
Target:  5'- uGCCCcGCCUCGUCGcUGcCGAcgACg -3'
miRNA:   3'- uCGGGcCGGAGCAGCuACuGUUagUG- -5'
23658 3' -55.5 NC_005261.1 + 94849 0.66 0.894506
Target:  5'- cGCCUGGCCUCGgCGcu--CGcgCACg -3'
miRNA:   3'- uCGGGCCGGAGCaGCuacuGUuaGUG- -5'
23658 3' -55.5 NC_005261.1 + 71802 0.66 0.894506
Target:  5'- cGGCCCGGCC-CGUgGGgacguaggaGACGGgcCACa -3'
miRNA:   3'- -UCGGGCCGGaGCAgCUa--------CUGUUa-GUG- -5'
23658 3' -55.5 NC_005261.1 + 97240 0.66 0.894506
Target:  5'- cGGCCCGGCCggcuggGUCGcggggucggGUGGCGGgacgUACa -3'
miRNA:   3'- -UCGGGCCGGag----CAGC---------UACUGUUa---GUG- -5'
23658 3' -55.5 NC_005261.1 + 30779 0.66 0.887712
Target:  5'- gAGCCCGGCCgCGgCGGUGGagg-UGCu -3'
miRNA:   3'- -UCGGGCCGGaGCaGCUACUguuaGUG- -5'
23658 3' -55.5 NC_005261.1 + 41354 0.66 0.887712
Target:  5'- cAGCUucuUGaGCCUCGU-GGUGACcGUCACc -3'
miRNA:   3'- -UCGG---GC-CGGAGCAgCUACUGuUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 11918 0.67 0.873438
Target:  5'- cGGCCCGGCCggCGgcugCGgcGGCccgCGCc -3'
miRNA:   3'- -UCGGGCCGGa-GCa---GCuaCUGuuaGUG- -5'
23658 3' -55.5 NC_005261.1 + 86993 0.67 0.873438
Target:  5'- cGCCCucguGGcCCUCGUCGAaGGcCAAgugCGCg -3'
miRNA:   3'- uCGGG----CC-GGAGCAGCUaCU-GUUa--GUG- -5'
23658 3' -55.5 NC_005261.1 + 84378 0.67 0.865966
Target:  5'- gGGCUCGGCCUCGgccgccgccUCGAgcucCAGcUCGCg -3'
miRNA:   3'- -UCGGGCCGGAGC---------AGCUacu-GUU-AGUG- -5'
23658 3' -55.5 NC_005261.1 + 97162 0.67 0.865966
Target:  5'- cGGCCCGGCCggcuggGUCGcgGGCGc---- -3'
miRNA:   3'- -UCGGGCCGGag----CAGCuaCUGUuagug -5'
23658 3' -55.5 NC_005261.1 + 362 0.67 0.858279
Target:  5'- cGGCCCGGCggCGguggcggCGGUGGCGGcgGCg -3'
miRNA:   3'- -UCGGGCCGgaGCa------GCUACUGUUagUG- -5'
23658 3' -55.5 NC_005261.1 + 138033 0.67 0.858279
Target:  5'- cGGCCCGGCggCGguggcggCGGUGGCGGcgGCg -3'
miRNA:   3'- -UCGGGCCGgaGCa------GCUACUGUUagUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.