miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23658 5' -58.1 NC_005261.1 + 29815 0.66 0.814868
Target:  5'- gGCGCGGGCGCCcgcgccgcgcucgccGAGcuGCGcGCCGUGc -3'
miRNA:   3'- -CGCGCUUGCGGc--------------CUU--CGCuCGGCACc -5'
23658 5' -58.1 NC_005261.1 + 17908 0.66 0.814019
Target:  5'- -gGCGAcgGCGCCGauuagcAGCGAGUCG-GGc -3'
miRNA:   3'- cgCGCU--UGCGGCcu----UCGCUCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 74274 0.66 0.822439
Target:  5'- cGCGCGuccGCGgCGGGcggGGCGGucGCCGccGGg -3'
miRNA:   3'- -CGCGCu--UGCgGCCU---UCGCU--CGGCa-CC- -5'
23658 5' -58.1 NC_005261.1 + 48915 0.66 0.814019
Target:  5'- aGCGCGAGC-CCGGGcgccAGCGccGCUGUc- -3'
miRNA:   3'- -CGCGCUUGcGGCCU----UCGCu-CGGCAcc -5'
23658 5' -58.1 NC_005261.1 + 92630 0.66 0.822439
Target:  5'- gGCGCGAgaGCGggaCCGGGAcCGGGaCCG-GGa -3'
miRNA:   3'- -CGCGCU--UGC---GGCCUUcGCUC-GGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 65533 0.66 0.814019
Target:  5'- aGCGCGGccGCGCgGGcAGC-AGCgCGUGc -3'
miRNA:   3'- -CGCGCU--UGCGgCCuUCGcUCG-GCACc -5'
23658 5' -58.1 NC_005261.1 + 37169 0.66 0.821605
Target:  5'- cGCGCGcuuGCGCCuGGGcgcugcuGGCGGcGCUGcUGGc -3'
miRNA:   3'- -CGCGCu--UGCGG-CCU-------UCGCU-CGGC-ACC- -5'
23658 5' -58.1 NC_005261.1 + 104124 0.66 0.854401
Target:  5'- cGCGCGGuuCGCCGcGAGCucGGCCGccaGGu -3'
miRNA:   3'- -CGCGCUu-GCGGCcUUCGc-UCGGCa--CC- -5'
23658 5' -58.1 NC_005261.1 + 28512 0.66 0.814019
Target:  5'- cCGCGGACcucggcCCGGAGGgGGGCCc-GGa -3'
miRNA:   3'- cGCGCUUGc-----GGCCUUCgCUCGGcaCC- -5'
23658 5' -58.1 NC_005261.1 + 38242 0.66 0.822439
Target:  5'- aGCG-GGGCGCCGGGcucgcacgccAGCcuGGGCUGgGGg -3'
miRNA:   3'- -CGCgCUUGCGGCCU----------UCG--CUCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 89198 0.66 0.822439
Target:  5'- uCGCGGGCGCC-GAGGCcGAcgCGUGGc -3'
miRNA:   3'- cGCGCUUGCGGcCUUCG-CUcgGCACC- -5'
23658 5' -58.1 NC_005261.1 + 45944 0.66 0.814019
Target:  5'- cGCGCGAGgGCCGccAGgGcGCCGUu- -3'
miRNA:   3'- -CGCGCUUgCGGCcuUCgCuCGGCAcc -5'
23658 5' -58.1 NC_005261.1 + 130852 0.66 0.814019
Target:  5'- uGCGCGcGCGcCCGGccGGGCGccgcGGCC-UGGc -3'
miRNA:   3'- -CGCGCuUGC-GGCC--UUCGC----UCGGcACC- -5'
23658 5' -58.1 NC_005261.1 + 103609 0.66 0.814019
Target:  5'- cGCgGCGGcaGCGCgGGAGGCG-GCgGcGGc -3'
miRNA:   3'- -CG-CGCU--UGCGgCCUUCGCuCGgCaCC- -5'
23658 5' -58.1 NC_005261.1 + 3905 0.66 0.817406
Target:  5'- gGCGCGGgcgcccgcgccgccgGCGCCGGccuccGGGUaGGCCaUGGg -3'
miRNA:   3'- -CGCGCU---------------UGCGGCC-----UUCGcUCGGcACC- -5'
23658 5' -58.1 NC_005261.1 + 48281 0.66 0.822439
Target:  5'- cGCGCGcaAGCGCCGcuuccAGCGAGgCCucgGGg -3'
miRNA:   3'- -CGCGC--UUGCGGCcu---UCGCUC-GGca-CC- -5'
23658 5' -58.1 NC_005261.1 + 23532 0.66 0.814019
Target:  5'- cGgGCGAGCGgCaGAGGCGgcaggAGCCGUc- -3'
miRNA:   3'- -CgCGCUUGCgGcCUUCGC-----UCGGCAcc -5'
23658 5' -58.1 NC_005261.1 + 135454 0.66 0.813168
Target:  5'- gGCGCGGGCGCUgcgGGAccucguacugcgcGGCGAGaacCUGaUGGa -3'
miRNA:   3'- -CGCGCUUGCGG---CCU-------------UCGCUC---GGC-ACC- -5'
23658 5' -58.1 NC_005261.1 + 76043 0.66 0.814019
Target:  5'- cGCGCGccaucagcGugGCCGGcgggcgccaccaGGGCGGGCugcugcgccuCGUGGc -3'
miRNA:   3'- -CGCGC--------UugCGGCC------------UUCGCUCG----------GCACC- -5'
23658 5' -58.1 NC_005261.1 + 100058 0.66 0.822439
Target:  5'- aGCGCGccgccgcCGcCCGGggGCGcGCCGc-- -3'
miRNA:   3'- -CGCGCuu-----GC-GGCCuuCGCuCGGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.