miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23658 5' -58.1 NC_005261.1 + 230 0.66 0.854401
Target:  5'- uCGCGGGCcCCGcGAGCGGGCCc-GGc -3'
miRNA:   3'- cGCGCUUGcGGCcUUCGCUCGGcaCC- -5'
23658 5' -58.1 NC_005261.1 + 358 0.7 0.593591
Target:  5'- gGCGCGGcccgGCGgCGGuGGCG-GCgGUGGc -3'
miRNA:   3'- -CGCGCU----UGCgGCCuUCGCuCGgCACC- -5'
23658 5' -58.1 NC_005261.1 + 524 0.66 0.846682
Target:  5'- gGCGCGGGCggGCgGGggGCaGGGCgGa-- -3'
miRNA:   3'- -CGCGCUUG--CGgCCuuCG-CUCGgCacc -5'
23658 5' -58.1 NC_005261.1 + 1847 0.69 0.663457
Target:  5'- cGCGCGAagGCGCCGGGcccgaAGaCGcGCCGcgaGGc -3'
miRNA:   3'- -CGCGCU--UGCGGCCU-----UC-GCuCGGCa--CC- -5'
23658 5' -58.1 NC_005261.1 + 2383 0.67 0.76971
Target:  5'- cGCaGCGGcGCGCUGGcGGCGAGCgCGcccgcGGg -3'
miRNA:   3'- -CG-CGCU-UGCGGCCuUCGCUCG-GCa----CC- -5'
23658 5' -58.1 NC_005261.1 + 2466 0.73 0.432949
Target:  5'- -gGCGAGCGCCGGgcGCcaGGGCuCG-GGg -3'
miRNA:   3'- cgCGCUUGCGGCCuuCG--CUCG-GCaCC- -5'
23658 5' -58.1 NC_005261.1 + 2548 0.76 0.32866
Target:  5'- aGCGCcgcGGCGCUGGgcGCGGGCgUGUGGu -3'
miRNA:   3'- -CGCGc--UUGCGGCCuuCGCUCG-GCACC- -5'
23658 5' -58.1 NC_005261.1 + 2585 0.66 0.830695
Target:  5'- cGgGCGGcacGCGgCGGAAGCc-GCCGUcGGc -3'
miRNA:   3'- -CgCGCU---UGCgGCCUUCGcuCGGCA-CC- -5'
23658 5' -58.1 NC_005261.1 + 2738 0.73 0.459623
Target:  5'- uGCGCuuGCGCCGc-GGCGGGCCGUcgcGGc -3'
miRNA:   3'- -CGCGcuUGCGGCcuUCGCUCGGCA---CC- -5'
23658 5' -58.1 NC_005261.1 + 2797 0.68 0.741656
Target:  5'- cCGCcGGCgGCCGGGAG-GGGCCG-GGc -3'
miRNA:   3'- cGCGcUUG-CGGCCUUCgCUCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 3381 0.68 0.732111
Target:  5'- aGCGCGGccgccagccGCGCCGGcacuuccgccGGCGGGCUGa-- -3'
miRNA:   3'- -CGCGCU---------UGCGGCCu---------UCGCUCGGCacc -5'
23658 5' -58.1 NC_005261.1 + 3545 0.67 0.787842
Target:  5'- gGCGCGcAGCGCggCGGgcGCGGcGCCGcuaaGGc -3'
miRNA:   3'- -CGCGC-UUGCG--GCCuuCGCU-CGGCa---CC- -5'
23658 5' -58.1 NC_005261.1 + 3905 0.66 0.817406
Target:  5'- gGCGCGGgcgcccgcgccgccgGCGCCGGccuccGGGUaGGCCaUGGg -3'
miRNA:   3'- -CGCGCU---------------UGCGGCC-----UUCGcUCGGcACC- -5'
23658 5' -58.1 NC_005261.1 + 4364 0.67 0.796713
Target:  5'- uCGCGAgugucgcccGCGCCGccGAAGCGcacgcGGCCG-GGc -3'
miRNA:   3'- cGCGCU---------UGCGGC--CUUCGC-----UCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 4524 0.75 0.351
Target:  5'- cGCGCGGGCGCCGc-GGCGAgggcGCCG-GGc -3'
miRNA:   3'- -CGCGCUUGCGGCcuUCGCU----CGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 5408 0.74 0.421673
Target:  5'- aGCGCGGGCGCCGcGAAcgaaggagacgaccGCG-GCCGcGGc -3'
miRNA:   3'- -CGCGCUUGCGGC-CUU--------------CGCuCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 5485 0.71 0.563911
Target:  5'- uCGCGcGCGCCGGGggguAGCugGGGCCGcGGc -3'
miRNA:   3'- cGCGCuUGCGGCCU----UCG--CUCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 5823 0.66 0.837978
Target:  5'- aGCgGCGGccgaugcGCGCCGGGuuacGGCG-GCCGagagagGGg -3'
miRNA:   3'- -CG-CGCU-------UGCGGCCU----UCGCuCGGCa-----CC- -5'
23658 5' -58.1 NC_005261.1 + 6432 0.69 0.653487
Target:  5'- uCGCGAggGCGguCCGGggGCcGGCCG-GGc -3'
miRNA:   3'- cGCGCU--UGC--GGCCuuCGcUCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 8341 0.69 0.673402
Target:  5'- cGCGCGccgUGCCGGGuuuuuguuccaAGCGGGuUUGUGGg -3'
miRNA:   3'- -CGCGCuu-GCGGCCU-----------UCGCUC-GGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.