miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23658 5' -58.1 NC_005261.1 + 42158 1.13 0.001156
Target:  5'- cGCGCGAACGCCGGAAGCGAGCCGUGGa -3'
miRNA:   3'- -CGCGCUUGCGGCCUUCGCUCGGCACC- -5'
23658 5' -58.1 NC_005261.1 + 34294 0.88 0.051952
Target:  5'- gGCGgGGACGCCGGGAGCGAGaCCGacgGGg -3'
miRNA:   3'- -CGCgCUUGCGGCCUUCGCUC-GGCa--CC- -5'
23658 5' -58.1 NC_005261.1 + 75501 0.87 0.060867
Target:  5'- aGCGCgGGGCGCUGGAGGCGcacGCCGUGGu -3'
miRNA:   3'- -CGCG-CUUGCGGCCUUCGCu--CGGCACC- -5'
23658 5' -58.1 NC_005261.1 + 69000 0.86 0.078895
Target:  5'- cGCGCGGGCGCCGcGGcuucguuGGCGAGuCCGUGGc -3'
miRNA:   3'- -CGCGCUUGCGGC-CU-------UCGCUC-GGCACC- -5'
23658 5' -58.1 NC_005261.1 + 28584 0.84 0.100922
Target:  5'- cGCGCGAGCGCCGGcgggccgcccgcgccGAGCuggcgGAGCUGUGGc -3'
miRNA:   3'- -CGCGCUUGCGGCC---------------UUCG-----CUCGGCACC- -5'
23658 5' -58.1 NC_005261.1 + 56110 0.83 0.107896
Target:  5'- uGCGCGAGCGgCGGGAGCGcGCCGcagGGc -3'
miRNA:   3'- -CGCGCUUGCgGCCUUCGCuCGGCa--CC- -5'
23658 5' -58.1 NC_005261.1 + 120930 0.82 0.139138
Target:  5'- cCGCGAGCGCCGGgcGCGGGaagGUGGa -3'
miRNA:   3'- cGCGCUUGCGGCCuuCGCUCgg-CACC- -5'
23658 5' -58.1 NC_005261.1 + 69757 0.81 0.165739
Target:  5'- -gGCGAGCGCgGGggGCGGcGCCG-GGg -3'
miRNA:   3'- cgCGCUUGCGgCCuuCGCU-CGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 68575 0.81 0.165739
Target:  5'- aGCGCGu-CGCCGccGAGGCGGGCCGcGGg -3'
miRNA:   3'- -CGCGCuuGCGGC--CUUCGCUCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 13688 0.8 0.192084
Target:  5'- cGCGCGGGCGUgGGGcggGGCGGGCUGgGGg -3'
miRNA:   3'- -CGCGCUUGCGgCCU---UCGCUCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 132594 0.79 0.196817
Target:  5'- cCGCGGACGcCCGGcccGGCGAGCCGccagGGg -3'
miRNA:   3'- cGCGCUUGC-GGCCu--UCGCUCGGCa---CC- -5'
23658 5' -58.1 NC_005261.1 + 69485 0.79 0.218865
Target:  5'- cGCGCGAugcuggugcaccuguACGCCGGcGGCGGGCUGccGGa -3'
miRNA:   3'- -CGCGCU---------------UGCGGCCuUCGCUCGGCa-CC- -5'
23658 5' -58.1 NC_005261.1 + 64887 0.79 0.22203
Target:  5'- gGCGgGAGCGCCGGGuccAGC-AGCgCGUGGu -3'
miRNA:   3'- -CGCgCUUGCGGCCU---UCGcUCG-GCACC- -5'
23658 5' -58.1 NC_005261.1 + 82615 0.78 0.227392
Target:  5'- cGCGUGAGcCGCCGGAucAGCGAGgCCGacaugUGGu -3'
miRNA:   3'- -CGCGCUU-GCGGCCU--UCGCUC-GGC-----ACC- -5'
23658 5' -58.1 NC_005261.1 + 127736 0.78 0.244136
Target:  5'- aGCGgGAgcuugGCGgCGGGAGCGGGCCGcGGc -3'
miRNA:   3'- -CGCgCU-----UGCgGCCUUCGCUCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 15029 0.78 0.249941
Target:  5'- -gGCGggUGCCGGggGCGuAGCgGgggGGg -3'
miRNA:   3'- cgCGCuuGCGGCCuuCGC-UCGgCa--CC- -5'
23658 5' -58.1 NC_005261.1 + 16177 0.77 0.268041
Target:  5'- gGCGCGGGCGUggCGGggGUGGGCgG-GGg -3'
miRNA:   3'- -CGCGCUUGCG--GCCuuCGCUCGgCaCC- -5'
23658 5' -58.1 NC_005261.1 + 113550 0.77 0.280686
Target:  5'- cGUGCGcGCGCUGGAccGCGAGCaGUGGu -3'
miRNA:   3'- -CGCGCuUGCGGCCUu-CGCUCGgCACC- -5'
23658 5' -58.1 NC_005261.1 + 44879 0.77 0.287184
Target:  5'- cCGCGAGCGCCGcGggGauGGCCG-GGg -3'
miRNA:   3'- cGCGCUUGCGGC-CuuCgcUCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 74708 0.76 0.2938
Target:  5'- cGCGCGGGCG-CGGAAcCGGGCCGcGGc -3'
miRNA:   3'- -CGCGCUUGCgGCCUUcGCUCGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.