miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 3' -56.7 NC_005261.1 + 2267 0.67 0.835277
Target:  5'- gGCGC-UCGUCCUCGCCGggCGGc--- -3'
miRNA:   3'- -UGUGcAGCAGGAGCGGCagGCUcuac -5'
23679 3' -56.7 NC_005261.1 + 9276 0.67 0.851275
Target:  5'- cACACcUCGUCCaUCGCCGcggaccgcaaCCGAGGa- -3'
miRNA:   3'- -UGUGcAGCAGG-AGCGGCa---------GGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 10761 0.72 0.555662
Target:  5'- gGCcuCGUCGUCCUCGUCGUCCu----- -3'
miRNA:   3'- -UGu-GCAGCAGGAGCGGCAGGcucuac -5'
23679 3' -56.7 NC_005261.1 + 10798 0.7 0.676647
Target:  5'- uCAuCGUCGUCCUCGUCGUCCn----- -3'
miRNA:   3'- uGU-GCAGCAGGAGCGGCAGGcucuac -5'
23679 3' -56.7 NC_005261.1 + 10819 0.77 0.33459
Target:  5'- --uCGUCGUCCUCGUCGUCgGAGuUGu -3'
miRNA:   3'- uguGCAGCAGGAGCGGCAGgCUCuAC- -5'
23679 3' -56.7 NC_005261.1 + 15129 0.71 0.645337
Target:  5'- -gGCGUCGcgacUCCUucgccccCGCCGUCCGcGGUGg -3'
miRNA:   3'- ugUGCAGC----AGGA-------GCGGCAGGCuCUAC- -5'
23679 3' -56.7 NC_005261.1 + 16394 0.66 0.866495
Target:  5'- cGC-CGUCGUCgUCGCCGggcggugCGGGAg- -3'
miRNA:   3'- -UGuGCAGCAGgAGCGGCag-----GCUCUac -5'
23679 3' -56.7 NC_005261.1 + 22857 1.08 0.002777
Target:  5'- aACACGUCGUCCUCGCCGUCCGAGAUGg -3'
miRNA:   3'- -UGUGCAGCAGGAGCGGCAGGCUCUAC- -5'
23679 3' -56.7 NC_005261.1 + 29846 0.67 0.84337
Target:  5'- uGCGCGcCGUgCUCGCCGgCCGcGcgGc -3'
miRNA:   3'- -UGUGCaGCAgGAGCGGCaGGCuCuaC- -5'
23679 3' -56.7 NC_005261.1 + 32597 0.71 0.604821
Target:  5'- cCGCGUCcUCCUCGUCGUCCGcguccucGGAc- -3'
miRNA:   3'- uGUGCAGcAGGAGCGGCAGGC-------UCUac -5'
23679 3' -56.7 NC_005261.1 + 37356 0.66 0.873797
Target:  5'- cCGCGggcgGUgCUCGCCGcCCGAGGc- -3'
miRNA:   3'- uGUGCag--CAgGAGCGGCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 37535 0.68 0.793144
Target:  5'- cGCACGagGUCCgcgCGCCGcucccgccgccgccaCCGGGGUGc -3'
miRNA:   3'- -UGUGCagCAGGa--GCGGCa--------------GGCUCUAC- -5'
23679 3' -56.7 NC_005261.1 + 41104 0.66 0.880888
Target:  5'- cCGCGUCGUCCgCGgCGggcCCGAGc-- -3'
miRNA:   3'- uGUGCAGCAGGaGCgGCa--GGCUCuac -5'
23679 3' -56.7 NC_005261.1 + 43865 0.67 0.84337
Target:  5'- cCGCGUCGUCCUCGgCGgcgcggCUGAu--- -3'
miRNA:   3'- uGUGCAGCAGGAGCgGCa-----GGCUcuac -5'
23679 3' -56.7 NC_005261.1 + 45912 0.68 0.764663
Target:  5'- cGC-CGUCGUCCucgcccUCGCCGUCCccgccgcgcgcGAGGg- -3'
miRNA:   3'- -UGuGCAGCAGG------AGCGGCAGG-----------CUCUac -5'
23679 3' -56.7 NC_005261.1 + 46113 0.68 0.792245
Target:  5'- gGC-CGUgGUCCgcguccagcaggUCGCCGcCCGAGAa- -3'
miRNA:   3'- -UGuGCAgCAGG------------AGCGGCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 47204 0.7 0.706623
Target:  5'- aGCAguaGUCGcgcUCCUCGCCG-CCGGGGc- -3'
miRNA:   3'- -UGUg--CAGC---AGGAGCGGCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 52315 0.68 0.809941
Target:  5'- uCGuCGUCGcacUCCUCGCCGUCCuuGGc- -3'
miRNA:   3'- uGU-GCAGC---AGGAGCGGCAGGcuCUac -5'
23679 3' -56.7 NC_005261.1 + 66474 0.73 0.535911
Target:  5'- gGCGCG-CGUCCUCGCgGUacagCGAGAg- -3'
miRNA:   3'- -UGUGCaGCAGGAGCGgCAg---GCUCUac -5'
23679 3' -56.7 NC_005261.1 + 67727 0.75 0.418717
Target:  5'- aGCGCGacgcaccgcagcagcUCGUCCuccucccccUCGCCGUCCGAGGc- -3'
miRNA:   3'- -UGUGC---------------AGCAGG---------AGCGGCAGGCUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.