miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 3' -56.7 NC_005261.1 + 125244 0.66 0.894413
Target:  5'- uACACGuucUCGUCCUCacugguguccUCGUCCGGGGg- -3'
miRNA:   3'- -UGUGC---AGCAGGAGc---------GGCAGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 132472 0.72 0.565617
Target:  5'- cCGCGcCGgcagcgCCUCGCCGUCCuGGGAc- -3'
miRNA:   3'- uGUGCaGCa-----GGAGCGGCAGG-CUCUac -5'
23679 3' -56.7 NC_005261.1 + 107533 0.72 0.575618
Target:  5'- aGCGCGUCGgcggCCaccaGCaCGUCCGAGAg- -3'
miRNA:   3'- -UGUGCAGCa---GGag--CG-GCAGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 32597 0.71 0.604821
Target:  5'- cCGCGUCcUCCUCGUCGUCCGcguccucGGAc- -3'
miRNA:   3'- uGUGCAGcAGGAGCGGCAGGC-------UCUac -5'
23679 3' -56.7 NC_005261.1 + 15129 0.71 0.645337
Target:  5'- -gGCGUCGcgacUCCUucgccccCGCCGUCCGcGGUGg -3'
miRNA:   3'- ugUGCAGC----AGGA-------GCGGCAGGCuCUAC- -5'
23679 3' -56.7 NC_005261.1 + 99612 0.7 0.654447
Target:  5'- -aGCGUCGUCCacagCGCCGccagcaggucgcCCGGGAUGc -3'
miRNA:   3'- ugUGCAGCAGGa---GCGGCa-----------GGCUCUAC- -5'
23679 3' -56.7 NC_005261.1 + 106666 0.7 0.656471
Target:  5'- gGCGCgGUCGUCCagCGCgCGcCCGAGGg- -3'
miRNA:   3'- -UGUG-CAGCAGGa-GCG-GCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 10798 0.7 0.676647
Target:  5'- uCAuCGUCGUCCUCGUCGUCCn----- -3'
miRNA:   3'- uGU-GCAGCAGGAGCGGCAGGcucuac -5'
23679 3' -56.7 NC_005261.1 + 47204 0.7 0.706623
Target:  5'- aGCAguaGUCGcgcUCCUCGCCG-CCGGGGc- -3'
miRNA:   3'- -UGUg--CAGC---AGGAGCGGCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 88574 0.72 0.555662
Target:  5'- gACGCGUCccgCUUCGCCG-CCGAGGc- -3'
miRNA:   3'- -UGUGCAGca-GGAGCGGCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 10761 0.72 0.555662
Target:  5'- gGCcuCGUCGUCCUCGUCGUCCu----- -3'
miRNA:   3'- -UGu-GCAGCAGGAGCGGCAGGcucuac -5'
23679 3' -56.7 NC_005261.1 + 99671 0.73 0.535911
Target:  5'- gAC-CGUCGUCagcgCGCUGcCCGGGAUGa -3'
miRNA:   3'- -UGuGCAGCAGga--GCGGCaGGCUCUAC- -5'
23679 3' -56.7 NC_005261.1 + 10819 0.77 0.33459
Target:  5'- --uCGUCGUCCUCGUCGUCgGAGuUGu -3'
miRNA:   3'- uguGCAGCAGGAGCGGCAGgCUCuAC- -5'
23679 3' -56.7 NC_005261.1 + 106840 0.75 0.406661
Target:  5'- uGCGCGUCGUCCagccCGCCGcCUGGGGg- -3'
miRNA:   3'- -UGUGCAGCAGGa---GCGGCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 67727 0.75 0.418717
Target:  5'- aGCGCGacgcaccgcagcagcUCGUCCuccucccccUCGCCGUCCGAGGc- -3'
miRNA:   3'- -UGUGC---------------AGCAGG---------AGCGGCAGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 98985 0.73 0.497204
Target:  5'- aGCACGUCGUCCUCGgCaaucuucagCGUCgCGAGcgGc -3'
miRNA:   3'- -UGUGCAGCAGGAGC-G---------GCAG-GCUCuaC- -5'
23679 3' -56.7 NC_005261.1 + 128031 0.73 0.497204
Target:  5'- ---aGUCaUCCUCGUCGUCCGAGGa- -3'
miRNA:   3'- ugugCAGcAGGAGCGGCAGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 77010 0.73 0.506769
Target:  5'- cGCGCGcCGcccUCCUCGCCGacgCCGAGGc- -3'
miRNA:   3'- -UGUGCaGC---AGGAGCGGCa--GGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 108669 0.73 0.516412
Target:  5'- -gGCGUCGcgUCCUCGUCGUCCGGc--- -3'
miRNA:   3'- ugUGCAGC--AGGAGCGGCAGGCUcuac -5'
23679 3' -56.7 NC_005261.1 + 66474 0.73 0.535911
Target:  5'- gGCGCG-CGUCCUCGCgGUacagCGAGAg- -3'
miRNA:   3'- -UGUGCaGCAGGAGCGgCAg---GCUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.