miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 3' -56.7 NC_005261.1 + 71327 0.67 0.854383
Target:  5'- aGCACGUagccggccgcgagcgCGUCCUCGgUGagcgCCGAGAg- -3'
miRNA:   3'- -UGUGCA---------------GCAGGAGCgGCa---GGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 72154 0.68 0.773984
Target:  5'- uGCACGUCcgggguGUCCgggauccCGgCGUCCGAGAc- -3'
miRNA:   3'- -UGUGCAG------CAGGa------GCgGCAGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 77010 0.73 0.506769
Target:  5'- cGCGCGcCGcccUCCUCGCCGacgCCGAGGc- -3'
miRNA:   3'- -UGUGCaGC---AGGAGCGGCa--GGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 79646 0.67 0.858986
Target:  5'- aGCuCGUUGUCCUCGCCGagCUGGc--- -3'
miRNA:   3'- -UGuGCAGCAGGAGCGGCa-GGCUcuac -5'
23679 3' -56.7 NC_005261.1 + 81303 0.67 0.830334
Target:  5'- cGCACGUCcgugccguugucgggGUCgUCGCCGUCguCGGGGc- -3'
miRNA:   3'- -UGUGCAG---------------CAGgAGCGGCAG--GCUCUac -5'
23679 3' -56.7 NC_005261.1 + 88574 0.72 0.555662
Target:  5'- gACGCGUCccgCUUCGCCG-CCGAGGc- -3'
miRNA:   3'- -UGUGCAGca-GGAGCGGCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 93590 0.68 0.809941
Target:  5'- cGCGCGcUCGgcgaCCUCGCCGUcgccCCGGGu-- -3'
miRNA:   3'- -UGUGC-AGCa---GGAGCGGCA----GGCUCuac -5'
23679 3' -56.7 NC_005261.1 + 93934 0.67 0.827003
Target:  5'- -uGCGcCGUCCgcgggCGCCGccUCCGGGcgGu -3'
miRNA:   3'- ugUGCaGCAGGa----GCGGC--AGGCUCuaC- -5'
23679 3' -56.7 NC_005261.1 + 98985 0.73 0.497204
Target:  5'- aGCACGUCGUCCUCGgCaaucuucagCGUCgCGAGcgGc -3'
miRNA:   3'- -UGUGCAGCAGGAGC-G---------GCAG-GCUCuaC- -5'
23679 3' -56.7 NC_005261.1 + 99612 0.7 0.654447
Target:  5'- -aGCGUCGUCCacagCGCCGccagcaggucgcCCGGGAUGc -3'
miRNA:   3'- ugUGCAGCAGGa---GCGGCa-----------GGCUCUAC- -5'
23679 3' -56.7 NC_005261.1 + 99671 0.73 0.535911
Target:  5'- gAC-CGUCGUCagcgCGCUGcCCGGGAUGa -3'
miRNA:   3'- -UGuGCAGCAGga--GCGGCaGGCUCUAC- -5'
23679 3' -56.7 NC_005261.1 + 100816 0.66 0.880888
Target:  5'- gGCGCGUgCG-CCUgCGCCGcccaggCCGGGAg- -3'
miRNA:   3'- -UGUGCA-GCaGGA-GCGGCa-----GGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 103227 0.67 0.818555
Target:  5'- aGCGCGcgcaGUCCUcCGCCGUCCGc---- -3'
miRNA:   3'- -UGUGCag--CAGGA-GCGGCAGGCucuac -5'
23679 3' -56.7 NC_005261.1 + 103584 0.67 0.827003
Target:  5'- cCGCGcCGUCgCUCGCCG-CCGuGGc- -3'
miRNA:   3'- uGUGCaGCAG-GAGCGGCaGGCuCUac -5'
23679 3' -56.7 NC_005261.1 + 106666 0.7 0.656471
Target:  5'- gGCGCgGUCGUCCagCGCgCGcCCGAGGg- -3'
miRNA:   3'- -UGUG-CAGCAGGa-GCG-GCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 106840 0.75 0.406661
Target:  5'- uGCGCGUCGUCCagccCGCCGcCUGGGGg- -3'
miRNA:   3'- -UGUGCAGCAGGa---GCGGCaGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 107533 0.72 0.575618
Target:  5'- aGCGCGUCGgcggCCaccaGCaCGUCCGAGAg- -3'
miRNA:   3'- -UGUGCAGCa---GGag--CG-GCAGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 108669 0.73 0.516412
Target:  5'- -gGCGUCGcgUCCUCGUCGUCCGGc--- -3'
miRNA:   3'- ugUGCAGC--AGGAGCGGCAGGCUcuac -5'
23679 3' -56.7 NC_005261.1 + 125244 0.66 0.894413
Target:  5'- uACACGuucUCGUCCUCacugguguccUCGUCCGGGGg- -3'
miRNA:   3'- -UGUGC---AGCAGGAGc---------GGCAGGCUCUac -5'
23679 3' -56.7 NC_005261.1 + 128031 0.73 0.497204
Target:  5'- ---aGUCaUCCUCGUCGUCCGAGGa- -3'
miRNA:   3'- ugugCAGcAGGAGCGGCAGGCUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.