Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23679 | 3' | -56.7 | NC_005261.1 | + | 45912 | 0.68 | 0.764663 |
Target: 5'- cGC-CGUCGUCCucgcccUCGCCGUCCccgccgcgcgcGAGGg- -3' miRNA: 3'- -UGuGCAGCAGG------AGCGGCAGG-----------CUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 47204 | 0.7 | 0.706623 |
Target: 5'- aGCAguaGUCGcgcUCCUCGCCG-CCGGGGc- -3' miRNA: 3'- -UGUg--CAGC---AGGAGCGGCaGGCUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 10798 | 0.7 | 0.676647 |
Target: 5'- uCAuCGUCGUCCUCGUCGUCCn----- -3' miRNA: 3'- uGU-GCAGCAGGAGCGGCAGGcucuac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 106666 | 0.7 | 0.656471 |
Target: 5'- gGCGCgGUCGUCCagCGCgCGcCCGAGGg- -3' miRNA: 3'- -UGUG-CAGCAGGa-GCG-GCaGGCUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 99612 | 0.7 | 0.654447 |
Target: 5'- -aGCGUCGUCCacagCGCCGccagcaggucgcCCGGGAUGc -3' miRNA: 3'- ugUGCAGCAGGa---GCGGCa-----------GGCUCUAC- -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 15129 | 0.71 | 0.645337 |
Target: 5'- -gGCGUCGcgacUCCUucgccccCGCCGUCCGcGGUGg -3' miRNA: 3'- ugUGCAGC----AGGA-------GCGGCAGGCuCUAC- -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 32597 | 0.71 | 0.604821 |
Target: 5'- cCGCGUCcUCCUCGUCGUCCGcguccucGGAc- -3' miRNA: 3'- uGUGCAGcAGGAGCGGCAGGC-------UCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 107533 | 0.72 | 0.575618 |
Target: 5'- aGCGCGUCGgcggCCaccaGCaCGUCCGAGAg- -3' miRNA: 3'- -UGUGCAGCa---GGag--CG-GCAGGCUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 132472 | 0.72 | 0.565617 |
Target: 5'- cCGCGcCGgcagcgCCUCGCCGUCCuGGGAc- -3' miRNA: 3'- uGUGCaGCa-----GGAGCGGCAGG-CUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 10761 | 0.72 | 0.555662 |
Target: 5'- gGCcuCGUCGUCCUCGUCGUCCu----- -3' miRNA: 3'- -UGu-GCAGCAGGAGCGGCAGGcucuac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 88574 | 0.72 | 0.555662 |
Target: 5'- gACGCGUCccgCUUCGCCG-CCGAGGc- -3' miRNA: 3'- -UGUGCAGca-GGAGCGGCaGGCUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 99671 | 0.73 | 0.535911 |
Target: 5'- gAC-CGUCGUCagcgCGCUGcCCGGGAUGa -3' miRNA: 3'- -UGuGCAGCAGga--GCGGCaGGCUCUAC- -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 66474 | 0.73 | 0.535911 |
Target: 5'- gGCGCG-CGUCCUCGCgGUacagCGAGAg- -3' miRNA: 3'- -UGUGCaGCAGGAGCGgCAg---GCUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 108669 | 0.73 | 0.516412 |
Target: 5'- -gGCGUCGcgUCCUCGUCGUCCGGc--- -3' miRNA: 3'- ugUGCAGC--AGGAGCGGCAGGCUcuac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 77010 | 0.73 | 0.506769 |
Target: 5'- cGCGCGcCGcccUCCUCGCCGacgCCGAGGc- -3' miRNA: 3'- -UGUGCaGC---AGGAGCGGCa--GGCUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 98985 | 0.73 | 0.497204 |
Target: 5'- aGCACGUCGUCCUCGgCaaucuucagCGUCgCGAGcgGc -3' miRNA: 3'- -UGUGCAGCAGGAGC-G---------GCAG-GCUCuaC- -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 128031 | 0.73 | 0.497204 |
Target: 5'- ---aGUCaUCCUCGUCGUCCGAGGa- -3' miRNA: 3'- ugugCAGcAGGAGCGGCAGGCUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 67727 | 0.75 | 0.418717 |
Target: 5'- aGCGCGacgcaccgcagcagcUCGUCCuccucccccUCGCCGUCCGAGGc- -3' miRNA: 3'- -UGUGC---------------AGCAGG---------AGCGGCAGGCUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 106840 | 0.75 | 0.406661 |
Target: 5'- uGCGCGUCGUCCagccCGCCGcCUGGGGg- -3' miRNA: 3'- -UGUGCAGCAGGa---GCGGCaGGCUCUac -5' |
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23679 | 3' | -56.7 | NC_005261.1 | + | 10819 | 0.77 | 0.33459 |
Target: 5'- --uCGUCGUCCUCGUCGUCgGAGuUGu -3' miRNA: 3'- uguGCAGCAGGAGCGGCAGgCUCuAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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