Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 74710 | 0.66 | 0.837875 |
Target: 5'- -cGCGGgcGCGGAacCGGGCcgcGGcAGCGGCCGc -3' miRNA: 3'- ccUGCC--UGCCU--GCCUG---UC-UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 94870 | 0.66 | 0.829834 |
Target: 5'- -cACGGccCGGGCGGGCGGcccGCGugCa -3' miRNA: 3'- ccUGCCu-GCCUGCCUGUCu--CGCugGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 76444 | 0.66 | 0.829834 |
Target: 5'- uGGCGGACGcgcccGACGGcgACGGcGGCG-CCGg -3' miRNA: 3'- cCUGCCUGC-----CUGCC--UGUC-UCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 100176 | 0.66 | 0.829834 |
Target: 5'- gGGACGcaacgccguGGCGG-CgGGGCAGcguGGCGGCCa -3' miRNA: 3'- -CCUGC---------CUGCCuG-CCUGUC---UCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 43779 | 0.67 | 0.821623 |
Target: 5'- gGGGCGGcgcGCGGA-GGGCgccgcgggugagGGGGCG-CCGg -3' miRNA: 3'- -CCUGCC---UGCCUgCCUG------------UCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 60050 | 0.67 | 0.821623 |
Target: 5'- cGACGG-CGG-CGGcgaAGAGCGgcgGCCGg -3' miRNA: 3'- cCUGCCuGCCuGCCug-UCUCGC---UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 99755 | 0.67 | 0.821623 |
Target: 5'- -cACGGccagcacguCGGACGGGgAGAGgCGGCCc -3' miRNA: 3'- ccUGCCu--------GCCUGCCUgUCUC-GCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 129561 | 0.67 | 0.821623 |
Target: 5'- aGACGG-CGGGCguagaGGAgGaGGCGGCCGc -3' miRNA: 3'- cCUGCCuGCCUG-----CCUgUcUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 68731 | 0.67 | 0.820793 |
Target: 5'- cGGCGGGCGccGGCGGGaagaagcgcccgcCGGGGCG-CCGc -3' miRNA: 3'- cCUGCCUGC--CUGCCU-------------GUCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23871 | 0.67 | 0.820793 |
Target: 5'- gGGGCGGGCuugccccGGGCGGGCcggcuAGGGUGGgCu -3' miRNA: 3'- -CCUGCCUG-------CCUGCCUG-----UCUCGCUgGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 27732 | 0.67 | 0.813251 |
Target: 5'- aGGAgCGGAgaCGcGCGGGCAGAGgaGCCGa -3' miRNA: 3'- -CCU-GCCU--GCcUGCCUGUCUCgcUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 50637 | 0.67 | 0.813251 |
Target: 5'- -cGCGGGCGG-CGGGguG-GCG-CCGg -3' miRNA: 3'- ccUGCCUGCCuGCCUguCuCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 1006 | 0.67 | 0.813251 |
Target: 5'- gGGGCGGG-GGGCGG--GGGGCGGgUGg -3' miRNA: 3'- -CCUGCCUgCCUGCCugUCUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 58300 | 0.67 | 0.804724 |
Target: 5'- cGGgGGGCGcGgGGAgGGGGCGGCCc -3' miRNA: 3'- cCUgCCUGCcUgCCUgUCUCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 74668 | 0.67 | 0.804724 |
Target: 5'- aGGcCGGggacGCGGACGcGACcgcgcgGGAGCuGGCCGc -3' miRNA: 3'- -CCuGCC----UGCCUGC-CUG------UCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 74414 | 0.67 | 0.804724 |
Target: 5'- cGGccGCGGGCGGGaGGGCcgaggAGAGCGcCCc -3' miRNA: 3'- -CC--UGCCUGCCUgCCUG-----UCUCGCuGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 127815 | 0.67 | 0.803863 |
Target: 5'- cGGCGGgccgcucgcgcucGCGGccgcgagcaGCGGACGGGGCGGUCGc -3' miRNA: 3'- cCUGCC-------------UGCC---------UGCCUGUCUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 131643 | 0.67 | 0.802137 |
Target: 5'- aGGACcGACGGGCcccccGGGCgcaccgucugcgagGGuGCGACCGc -3' miRNA: 3'- -CCUGcCUGCCUG-----CCUG--------------UCuCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 75477 | 0.67 | 0.79605 |
Target: 5'- cGGGCGG-CGGcGCGGGCcgcuacgagcgcGGGGCG-CUGg -3' miRNA: 3'- -CCUGCCuGCC-UGCCUG------------UCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 77223 | 0.67 | 0.79605 |
Target: 5'- uGGcCGGGgGGGaGGAgcCAGAGCGcaGCCGg -3' miRNA: 3'- -CCuGCCUgCCUgCCU--GUCUCGC--UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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