miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23684 5' -54.5 NC_005261.1 + 2789 0.66 0.948529
Target:  5'- aGGGgCuGCCGCCGG-CGGccGgGAGGGg -3'
miRNA:   3'- -CCCaGuCGGCGGCCaGCUa-CgUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 98807 0.66 0.948529
Target:  5'- cGGGUC-GCCGgCGG-CG-UGcCGGAAGa -3'
miRNA:   3'- -CCCAGuCGGCgGCCaGCuAC-GUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 72224 0.66 0.948529
Target:  5'- uGGuGUCccGCCgGCCGG-CGGUGCGcgcAAAGu -3'
miRNA:   3'- -CC-CAGu-CGG-CGGCCaGCUACGU---UUUC- -5'
23684 5' -54.5 NC_005261.1 + 59345 0.66 0.948529
Target:  5'- cGGGUC-GCCGCC-GUCGccaCGAGGGu -3'
miRNA:   3'- -CCCAGuCGGCGGcCAGCuacGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 83884 0.66 0.947228
Target:  5'- cGGGUCagcucugagcgcggGGCCGCCGGgcUCGGgacCGAcGGg -3'
miRNA:   3'- -CCCAG--------------UCGGCGGCC--AGCUac-GUUuUC- -5'
23684 5' -54.5 NC_005261.1 + 31481 0.66 0.944109
Target:  5'- ----uGGCCGCCGGUgCGcgGCGGGc- -3'
miRNA:   3'- cccagUCGGCGGCCA-GCuaCGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 121159 0.66 0.944109
Target:  5'- cGGGUagGGuuGcCCGGgcgcUCGGUGCAcgGGg -3'
miRNA:   3'- -CCCAg-UCggC-GGCC----AGCUACGUuuUC- -5'
23684 5' -54.5 NC_005261.1 + 49531 0.66 0.939448
Target:  5'- cGGGcCAGCCGCCGucCGcgGCc---- -3'
miRNA:   3'- -CCCaGUCGGCGGCcaGCuaCGuuuuc -5'
23684 5' -54.5 NC_005261.1 + 105126 0.66 0.938969
Target:  5'- cGGGcgCGGgCCGCCGGcgcgcgcagguccUCGcgGCucGAGg -3'
miRNA:   3'- -CCCa-GUC-GGCGGCC-------------AGCuaCGuuUUC- -5'
23684 5' -54.5 NC_005261.1 + 82058 0.66 0.934545
Target:  5'- cGGGcCAcGUCGCCGgGUCGAcgGCGu--- -3'
miRNA:   3'- -CCCaGU-CGGCGGC-CAGCUa-CGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 94089 0.66 0.934545
Target:  5'- cGGGaacGCCGCCG-UCcGUGCGGAAGc -3'
miRNA:   3'- -CCCaguCGGCGGCcAGcUACGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 121779 0.66 0.934545
Target:  5'- gGGGU-GGCCgcgGCCGG-CGGgcuggGCAGGGGg -3'
miRNA:   3'- -CCCAgUCGG---CGGCCaGCUa----CGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 59221 0.66 0.924004
Target:  5'- -cGUCucguaguGCCGCCGGgccaCGA-GCGAGAGc -3'
miRNA:   3'- ccCAGu------CGGCGGCCa---GCUaCGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 97687 0.66 0.924004
Target:  5'- uGGGcggGGCUGCCGGggCGGUGgGGAGa -3'
miRNA:   3'- -CCCag-UCGGCGGCCa-GCUACgUUUUc -5'
23684 5' -54.5 NC_005261.1 + 96622 0.67 0.918367
Target:  5'- uGGcgcgCAGCCGCCGGgCGAUcuucucGCAGGc- -3'
miRNA:   3'- cCCa---GUCGGCGGCCaGCUA------CGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 62744 0.67 0.918367
Target:  5'- uGGagGGCgGCCaGGUCGcUGUggGAGa -3'
miRNA:   3'- cCCagUCGgCGG-CCAGCuACGuuUUC- -5'
23684 5' -54.5 NC_005261.1 + 98172 0.67 0.912485
Target:  5'- cGGGUguguccuuggAGCCGCCGGgggCGcgGCGGGc- -3'
miRNA:   3'- -CCCAg---------UCGGCGGCCa--GCuaCGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 21792 0.67 0.90636
Target:  5'- cGGGccgccgCAGCCGCCGGcCGG-GCc---- -3'
miRNA:   3'- -CCCa-----GUCGGCGGCCaGCUaCGuuuuc -5'
23684 5' -54.5 NC_005261.1 + 31037 0.67 0.90636
Target:  5'- cGG-CGcGCCGCCGGguccccagCGcgGCGGGAGc -3'
miRNA:   3'- cCCaGU-CGGCGGCCa-------GCuaCGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 114992 0.68 0.886555
Target:  5'- cGGGcCGGCCGCCGcGgcccCGGccccGCGGAGGc -3'
miRNA:   3'- -CCCaGUCGGCGGC-Ca---GCUa---CGUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.