miRNA display CGI


Results 1 - 20 of 569 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23686 5' -58.4 NC_005261.1 + 36385 0.66 0.759645
Target:  5'- gGCCCCAGucugcCGGCccuGGCCCacauaGCgggauGGGGCa -3'
miRNA:   3'- -CGGGGUUuu---GUCG---CCGGGg----CG-----UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 77796 0.66 0.759645
Target:  5'- aCCCCGGcGAgGGCGcGCCC-GCcGAGCu -3'
miRNA:   3'- cGGGGUU-UUgUCGC-CGGGgCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 103013 0.66 0.768113
Target:  5'- cGCUCCGcguggcucucgaaGAACGcGCGGgC-CGCAGGGCc -3'
miRNA:   3'- -CGGGGU-------------UUUGU-CGCCgGgGCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 12505 0.66 0.759645
Target:  5'- gGCCCCccg--GGCGaCCgCGCGGGGCc -3'
miRNA:   3'- -CGGGGuuuugUCGCcGGgGCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 21755 0.66 0.759645
Target:  5'- uGCgCCUGGAGCgcgcgccgGGCGaGCCgCCGCGGcGCg -3'
miRNA:   3'- -CG-GGGUUUUG--------UCGC-CGG-GGCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 131826 0.66 0.758698
Target:  5'- cGCCgCuuGAC-GCGGCgCCCGCcugcugcGGGGUg -3'
miRNA:   3'- -CGGgGuuUUGuCGCCG-GGGCG-------UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 16966 0.66 0.759645
Target:  5'- gGCCCC---ACAGCGugcGCCCCaccuGCGGGuccGCg -3'
miRNA:   3'- -CGGGGuuuUGUCGC---CGGGG----CGUCU---CG- -5'
23686 5' -58.4 NC_005261.1 + 32485 0.66 0.758698
Target:  5'- uUCCCGGggccggcGACGGCGGCaUCgGCGGGGg -3'
miRNA:   3'- cGGGGUU-------UUGUCGCCG-GGgCGUCUCg -5'
23686 5' -58.4 NC_005261.1 + 15819 0.66 0.759645
Target:  5'- -aCCCAGAAgAGCaacaGGCaCCGCAucgcGAGCg -3'
miRNA:   3'- cgGGGUUUUgUCG----CCGgGGCGU----CUCG- -5'
23686 5' -58.4 NC_005261.1 + 79224 0.66 0.759645
Target:  5'- cGgUCgAGAGC-GCGGCgCCCGCGGcGCc -3'
miRNA:   3'- -CgGGgUUUUGuCGCCG-GGGCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 37054 0.66 0.768113
Target:  5'- uGCCCC-------CGGUCCCGC-GAGCg -3'
miRNA:   3'- -CGGGGuuuugucGCCGGGGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 135279 0.66 0.759645
Target:  5'- gGCCUgugCAGAACGGCgGGUUCCGCGcgaccGGCg -3'
miRNA:   3'- -CGGG---GUUUUGUCG-CCGGGGCGUc----UCG- -5'
23686 5' -58.4 NC_005261.1 + 5461 0.66 0.76342
Target:  5'- cGCCCCcccGAGCAGC--CCCCGCuaucgcgcgcgccggGGGGUa -3'
miRNA:   3'- -CGGGGu--UUUGUCGccGGGGCG---------------UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 113132 0.66 0.759645
Target:  5'- cGCCCgCcgcGCGGCGGCUgaacguggagaUCGCcGAGCg -3'
miRNA:   3'- -CGGG-GuuuUGUCGCCGG-----------GGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 109101 0.66 0.756802
Target:  5'- gGUCCCGGAcgccggccaugaggGCGgcggugucgugcGCGGCCCCagGCAG-GCg -3'
miRNA:   3'- -CGGGGUUU--------------UGU------------CGCCGGGG--CGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 106577 0.66 0.762478
Target:  5'- gGCCCCGGGgccgccgcGCGGCGcuccuccuggaccucGUCCCagacgccGCGGAGCc -3'
miRNA:   3'- -CGGGGUUU--------UGUCGC---------------CGGGG-------CGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 31582 0.66 0.759645
Target:  5'- cGCgCCGGacGugAGCGcGCUCggcgCGCAGGGCg -3'
miRNA:   3'- -CGgGGUU--UugUCGC-CGGG----GCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 118085 0.66 0.759645
Target:  5'- cGCgCUCGucuGCuGGCGGCCCgccgCGCAGAcGCu -3'
miRNA:   3'- -CG-GGGUuu-UG-UCGCCGGG----GCGUCU-CG- -5'
23686 5' -58.4 NC_005261.1 + 71003 0.66 0.759645
Target:  5'- gGCCgCCAGGcCAGCucGCCgCGCAGgaaGGCg -3'
miRNA:   3'- -CGG-GGUUUuGUCGc-CGGgGCGUC---UCG- -5'
23686 5' -58.4 NC_005261.1 + 32642 0.66 0.759645
Target:  5'- cGCCCUGGAGCGG-GGCcagcccCCCGCGccGCu -3'
miRNA:   3'- -CGGGGUUUUGUCgCCG------GGGCGUcuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.