miRNA display CGI


Results 1 - 20 of 569 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23686 5' -58.4 NC_005261.1 + 8 0.8 0.156426
Target:  5'- cGCCCCucguGCAGCgGGCCCCGCgcgaccccgggGGGGUg -3'
miRNA:   3'- -CGGGGuuu-UGUCG-CCGGGGCG-----------UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 100 0.67 0.724936
Target:  5'- cGCCCCcGGGCcccgccgcccgcgccGGCGccGCCCCuggugcucGCGGGGCu -3'
miRNA:   3'- -CGGGGuUUUG---------------UCGC--CGGGG--------CGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 218 0.77 0.221492
Target:  5'- cGCCCCugguGCucGCgGGCCCCGC-GAGCg -3'
miRNA:   3'- -CGGGGuuu-UGu-CG-CCGGGGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 248 0.7 0.549938
Target:  5'- gGCCCgGcuGCGGCGGCggCUGCGGcGGCg -3'
miRNA:   3'- -CGGGgUuuUGUCGCCGg-GGCGUC-UCG- -5'
23686 5' -58.4 NC_005261.1 + 346 0.71 0.482148
Target:  5'- gGCCCgCAGcccGGC-GCGGCCCgGCGGcgguGGCg -3'
miRNA:   3'- -CGGG-GUU---UUGuCGCCGGGgCGUC----UCG- -5'
23686 5' -58.4 NC_005261.1 + 965 0.83 0.098313
Target:  5'- aGCCCgUAGAGCGGCgGGCCgCgCGCAGAGCg -3'
miRNA:   3'- -CGGG-GUUUUGUCG-CCGG-G-GCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 1383 0.68 0.68117
Target:  5'- cGUCCCAGGccacgccgggcGCcGCGGCCgCgGCGGcGGCg -3'
miRNA:   3'- -CGGGGUUU-----------UGuCGCCGG-GgCGUC-UCG- -5'
23686 5' -58.4 NC_005261.1 + 1435 0.66 0.805374
Target:  5'- cGCCuCCAGcaccAGCGGCGGCgCCuCGGcGUg -3'
miRNA:   3'- -CGG-GGUU----UUGUCGCCGgGGcGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 1469 0.73 0.36847
Target:  5'- gGCUCCAGcAGC-GCGGCCgCGCAGAagGCc -3'
miRNA:   3'- -CGGGGUU-UUGuCGCCGGgGCGUCU--CG- -5'
23686 5' -58.4 NC_005261.1 + 1544 0.66 0.80007
Target:  5'- cGCCCgCAGGccagguacaccggccGCAGCGGCg-CGCcGAGCc -3'
miRNA:   3'- -CGGG-GUUU---------------UGUCGCCGggGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 1706 0.66 0.778332
Target:  5'- cGCUgCCGGuacucgcGCGGCGGCacgggcaCCGCGGuGCg -3'
miRNA:   3'- -CGG-GGUUu------UGUCGCCGg------GGCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 1796 0.73 0.393045
Target:  5'- aGCCgCA--GCGGCGGCgCCCcgggGUAGAGCc -3'
miRNA:   3'- -CGGgGUuuUGUCGCCG-GGG----CGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 1984 0.69 0.620381
Target:  5'- gGCCgggCCAu--CGGCGGCCaguuCGCGGGGUc -3'
miRNA:   3'- -CGG---GGUuuuGUCGCCGGg---GCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 2035 0.7 0.579921
Target:  5'- aGCCgCCGccGCGccGCGGCCagCCGCAG-GCa -3'
miRNA:   3'- -CGG-GGUuuUGU--CGCCGG--GGCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 2096 0.69 0.600105
Target:  5'- gGUCCCGcgucgcGAGCAGCagcacGCCCUGCGcgccGAGCg -3'
miRNA:   3'- -CGGGGU------UUUGUCGc----CGGGGCGU----CUCG- -5'
23686 5' -58.4 NC_005261.1 + 2302 0.7 0.559885
Target:  5'- uCCCC-GGGCAGCGGgU-CGUAGAGCa -3'
miRNA:   3'- cGGGGuUUUGUCGCCgGgGCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 2380 0.69 0.639677
Target:  5'- cGCCgCAGcggcgcgcuGGCGGCgagcgcgcccgcgGGCCCCGCGcGGCg -3'
miRNA:   3'- -CGGgGUU---------UUGUCG-------------CCGGGGCGUcUCG- -5'
23686 5' -58.4 NC_005261.1 + 2524 0.66 0.795608
Target:  5'- aCCUCGGGGCGGCaguaGGCCgccagcgCCGCGGcGCu -3'
miRNA:   3'- cGGGGUUUUGUCG----CCGG-------GGCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 2603 0.69 0.630536
Target:  5'- aGCCgCCGucGGCGGCGGggCCGCcGGGCg -3'
miRNA:   3'- -CGG-GGUu-UUGUCGCCggGGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 2638 0.69 0.619366
Target:  5'- gGgCCCAGcacgcgggcgggcAGCGGCGGCuCCCGCcGcGCu -3'
miRNA:   3'- -CgGGGUU-------------UUGUCGCCG-GGGCGuCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.