miRNA display CGI


Results 1 - 20 of 569 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23686 5' -58.4 NC_005261.1 + 18742 1.14 0.00068
Target:  5'- cGCCCCAAAACAGCGGCCCCGCAGAGCa -3'
miRNA:   3'- -CGGGGUUUUGUCGCCGGGGCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 132726 0.86 0.062671
Target:  5'- aCCUCAuuGCGGCGGCCCCGCacucaAGGGCa -3'
miRNA:   3'- cGGGGUuuUGUCGCCGGGGCG-----UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 965 0.83 0.098313
Target:  5'- aGCCCgUAGAGCGGCgGGCCgCgCGCAGAGCg -3'
miRNA:   3'- -CGGG-GUUUUGUCG-CCGG-G-GCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 4720 0.82 0.112021
Target:  5'- gGCCCCGGAGuCGGCGGCCCC--AGAGUc -3'
miRNA:   3'- -CGGGGUUUU-GUCGCCGGGGcgUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 121384 0.81 0.124255
Target:  5'- cGCCCCGcgGCGGCGGCgCCUGCccGAGUg -3'
miRNA:   3'- -CGGGGUuuUGUCGCCG-GGGCGu-CUCG- -5'
23686 5' -58.4 NC_005261.1 + 35046 0.81 0.124255
Target:  5'- cGCCCUA--ACGGCGGCCgCGCGGcGGCg -3'
miRNA:   3'- -CGGGGUuuUGUCGCCGGgGCGUC-UCG- -5'
23686 5' -58.4 NC_005261.1 + 40256 0.81 0.134232
Target:  5'- aGCgCCAugGCGGCGGCCgCgGCGGGGCu -3'
miRNA:   3'- -CGgGGUuuUGUCGCCGG-GgCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 52371 0.8 0.137718
Target:  5'- -gCCCGcgGCGGCGGCCCCGgucguCAGGGCc -3'
miRNA:   3'- cgGGGUuuUGUCGCCGGGGC-----GUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 6240 0.8 0.144941
Target:  5'- cGCCCgGGGAgGGCcugcccGCCCCGCGGGGCg -3'
miRNA:   3'- -CGGGgUUUUgUCGc-----CGGGGCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 137692 0.8 0.152509
Target:  5'- cGCCCCucguGCAGCgGGCCCCGCgcgaccccggGGGGUg -3'
miRNA:   3'- -CGGGGuuu-UGUCG-CCGGGGCG----------UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 104812 0.8 0.156426
Target:  5'- gGUCCCGcuccGCAGCGGCgUCGCGGGGCc -3'
miRNA:   3'- -CGGGGUuu--UGUCGCCGgGGCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 8 0.8 0.156426
Target:  5'- cGCCCCucguGCAGCgGGCCCCGCgcgaccccgggGGGGUg -3'
miRNA:   3'- -CGGGGuuu-UGUCG-CCGGGGCG-----------UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 12537 0.79 0.164119
Target:  5'- cGCCgCCGAAuuuauacGCGGgGGCCCCGCGccGGGCa -3'
miRNA:   3'- -CGG-GGUUU-------UGUCgCCGGGGCGU--CUCG- -5'
23686 5' -58.4 NC_005261.1 + 92209 0.79 0.164533
Target:  5'- aGCCgCCGAAGcCGGCgucgucGGCCCCGCcGAGCg -3'
miRNA:   3'- -CGG-GGUUUU-GUCG------CCGGGGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 20128 0.79 0.168727
Target:  5'- gGCCC----GCAGCGGCUCCGC-GAGCg -3'
miRNA:   3'- -CGGGguuuUGUCGCCGGGGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 127009 0.79 0.168727
Target:  5'- aCCCCGccgcAGGCGGCGGCCCgaGCAGGGa -3'
miRNA:   3'- cGGGGU----UUUGUCGCCGGGg-CGUCUCg -5'
23686 5' -58.4 NC_005261.1 + 134555 0.79 0.177403
Target:  5'- cGCCCCuugcuGGGCGgcgccGCGGCUgCGCAGGGCg -3'
miRNA:   3'- -CGGGGu----UUUGU-----CGCCGGgGCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 31094 0.78 0.186473
Target:  5'- gGCCCCAugccgccCGGCGGCCCCGCcGccgacGGCg -3'
miRNA:   3'- -CGGGGUuuu----GUCGCCGGGGCGuC-----UCG- -5'
23686 5' -58.4 NC_005261.1 + 21214 0.78 0.195949
Target:  5'- gGCCCCGGccgcGACGGCGGgCCCGuCGGcuGGCg -3'
miRNA:   3'- -CGGGGUU----UUGUCGCCgGGGC-GUC--UCG- -5'
23686 5' -58.4 NC_005261.1 + 79619 0.78 0.200843
Target:  5'- gGCUCCAcGAGCucGCGGCCCgGCAGcAGCu -3'
miRNA:   3'- -CGGGGU-UUUGu-CGCCGGGgCGUC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.