miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23688 5' -56.3 NC_005261.1 + 109186 0.66 0.870857
Target:  5'- uAGCagcgCCGCGUcGGgcgUGCgcaggCGCUCGUAg -3'
miRNA:   3'- -UCGga--GGCGUA-UCa--ACGa----GCGAGCGU- -5'
23688 5' -56.3 NC_005261.1 + 108029 0.66 0.85546
Target:  5'- cAGCacgUCCGCGUAGUacgggUGCagGUUUGCGa -3'
miRNA:   3'- -UCGg--AGGCGUAUCA-----ACGagCGAGCGU- -5'
23688 5' -56.3 NC_005261.1 + 102577 0.66 0.85546
Target:  5'- cGCCgUCCGCGUcGGcgGcCUCGCcCGCGc -3'
miRNA:   3'- uCGG-AGGCGUA-UCaaC-GAGCGaGCGU- -5'
23688 5' -56.3 NC_005261.1 + 72514 0.66 0.854667
Target:  5'- gGGCg-CCGCAUccuccuuGGcgGCUCGCUgCGCGg -3'
miRNA:   3'- -UCGgaGGCGUA-------UCaaCGAGCGA-GCGU- -5'
23688 5' -56.3 NC_005261.1 + 117931 0.66 0.847443
Target:  5'- aGGCCggCUGCGgcccgUGCgCGCUCGCu -3'
miRNA:   3'- -UCGGa-GGCGUauca-ACGaGCGAGCGu -5'
23688 5' -56.3 NC_005261.1 + 107315 0.66 0.847443
Target:  5'- cGGCCgCCGCGUGca-GCUCGCccaGCAc -3'
miRNA:   3'- -UCGGaGGCGUAUcaaCGAGCGag-CGU- -5'
23688 5' -56.3 NC_005261.1 + 129801 0.66 0.839225
Target:  5'- cGCCUCCGC------GCUCGCgccCGCGc -3'
miRNA:   3'- uCGGAGGCGuaucaaCGAGCGa--GCGU- -5'
23688 5' -56.3 NC_005261.1 + 80641 0.66 0.830812
Target:  5'- aAGCgCUCCGgcgaGUAGcuggugUGCUCGCggugCGCGc -3'
miRNA:   3'- -UCG-GAGGCg---UAUCa-----ACGAGCGa---GCGU- -5'
23688 5' -56.3 NC_005261.1 + 82562 0.67 0.822212
Target:  5'- cGGCCgcgcgCCGCAgca--GCUCGCgcagCGCGu -3'
miRNA:   3'- -UCGGa----GGCGUaucaaCGAGCGa---GCGU- -5'
23688 5' -56.3 NC_005261.1 + 126452 0.67 0.822212
Target:  5'- aGGCCagCCGCGccAGcgcGCUCGcCUCGCGg -3'
miRNA:   3'- -UCGGa-GGCGUa-UCaa-CGAGC-GAGCGU- -5'
23688 5' -56.3 NC_005261.1 + 61204 0.67 0.822212
Target:  5'- cAGCCaggacUCCGC--GGUUGCgaucgCGCUCgGCGu -3'
miRNA:   3'- -UCGG-----AGGCGuaUCAACGa----GCGAG-CGU- -5'
23688 5' -56.3 NC_005261.1 + 115423 0.67 0.813434
Target:  5'- cAGCCggggCCGCGgcccgaGCUCGCgcUCGCGg -3'
miRNA:   3'- -UCGGa---GGCGUaucaa-CGAGCG--AGCGU- -5'
23688 5' -56.3 NC_005261.1 + 132691 0.67 0.813434
Target:  5'- gGGCUUCCGCGUGGccgUGCcCGUcccggCGCc -3'
miRNA:   3'- -UCGGAGGCGUAUCa--ACGaGCGa----GCGu -5'
23688 5' -56.3 NC_005261.1 + 21851 0.67 0.804485
Target:  5'- cGCC-CCGCAgcuGacGCUCGCgcUCGCGa -3'
miRNA:   3'- uCGGaGGCGUau-CaaCGAGCG--AGCGU- -5'
23688 5' -56.3 NC_005261.1 + 28774 0.67 0.804485
Target:  5'- cGCCUgggCCGCGgcgcGGgcGCUCGCggcCGCGg -3'
miRNA:   3'- uCGGA---GGCGUa---UCaaCGAGCGa--GCGU- -5'
23688 5' -56.3 NC_005261.1 + 46531 0.67 0.795374
Target:  5'- cGCCUCCGC-----UGCgCGCUgGCAg -3'
miRNA:   3'- uCGGAGGCGuaucaACGaGCGAgCGU- -5'
23688 5' -56.3 NC_005261.1 + 96791 0.67 0.78611
Target:  5'- cGCCUCCGUcuccGUcccgGCUCGCUC-CAg -3'
miRNA:   3'- uCGGAGGCGuau-CAa---CGAGCGAGcGU- -5'
23688 5' -56.3 NC_005261.1 + 125999 0.67 0.78611
Target:  5'- uGGCCUCUGgagucguccCGUAGUUGaUCGCgccgCGCGg -3'
miRNA:   3'- -UCGGAGGC---------GUAUCAACgAGCGa---GCGU- -5'
23688 5' -56.3 NC_005261.1 + 132355 0.67 0.78611
Target:  5'- cAGCUUCCGCcgcGgcGCgcucgccgCGCUCGCGg -3'
miRNA:   3'- -UCGGAGGCGuauCaaCGa-------GCGAGCGU- -5'
23688 5' -56.3 NC_005261.1 + 133672 0.68 0.776704
Target:  5'- cGCCUCCgGCGccaacgGCUCGCUcCGCu -3'
miRNA:   3'- uCGGAGG-CGUaucaa-CGAGCGA-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.