miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23689 3' -53.5 NC_005261.1 + 123508 0.66 0.959857
Target:  5'- --cAGCGGCAGUGCCgCGucc-GCUa- -3'
miRNA:   3'- ccaUCGCCGUCAUGG-GCuucaCGAag -5'
23689 3' -53.5 NC_005261.1 + 83407 0.66 0.959857
Target:  5'- --aGGCGaGCAgGUGCgCGAAGUugagcuGCUUCa -3'
miRNA:   3'- ccaUCGC-CGU-CAUGgGCUUCA------CGAAG- -5'
23689 3' -53.5 NC_005261.1 + 129736 0.66 0.959857
Target:  5'- cGGcagGGCGGCGGgGCCCGGc---CUUCa -3'
miRNA:   3'- -CCa--UCGCCGUCaUGGGCUucacGAAG- -5'
23689 3' -53.5 NC_005261.1 + 68871 0.66 0.956052
Target:  5'- ---cGCGGCuGUGCgCCGucGUGCg-- -3'
miRNA:   3'- ccauCGCCGuCAUG-GGCuuCACGaag -5'
23689 3' -53.5 NC_005261.1 + 38310 0.66 0.956052
Target:  5'- --gAGCGcGCAGggcgGCCCGAuGGUGUUc- -3'
miRNA:   3'- ccaUCGC-CGUCa---UGGGCU-UCACGAag -5'
23689 3' -53.5 NC_005261.1 + 94777 0.66 0.943193
Target:  5'- cGUGGCGccGCGcGaGCUCGAGGUGCUg- -3'
miRNA:   3'- cCAUCGC--CGU-CaUGGGCUUCACGAag -5'
23689 3' -53.5 NC_005261.1 + 56156 0.67 0.938414
Target:  5'- gGGUGGCGGCAGcggcgggGCCCGcGGg----- -3'
miRNA:   3'- -CCAUCGCCGUCa------UGGGCuUCacgaag -5'
23689 3' -53.5 NC_005261.1 + 109855 0.67 0.938414
Target:  5'- uGGUGGCGGCu---CCUGggG-GCa-- -3'
miRNA:   3'- -CCAUCGCCGucauGGGCuuCaCGaag -5'
23689 3' -53.5 NC_005261.1 + 38275 0.67 0.933384
Target:  5'- uGGgGGCGGCuGGUGCaCGcGGUGCUg- -3'
miRNA:   3'- -CCaUCGCCG-UCAUGgGCuUCACGAag -5'
23689 3' -53.5 NC_005261.1 + 110243 0.67 0.933384
Target:  5'- --gGGCGGCgcGGcGCCCGggGgGCUg- -3'
miRNA:   3'- ccaUCGCCG--UCaUGGGCuuCaCGAag -5'
23689 3' -53.5 NC_005261.1 + 32389 0.67 0.928103
Target:  5'- cGgcGCGGCGGcguCCCGGAGcGCg-- -3'
miRNA:   3'- cCauCGCCGUCau-GGGCUUCaCGaag -5'
23689 3' -53.5 NC_005261.1 + 22986 0.67 0.915597
Target:  5'- aGGaGGCGGCGGaggaagagggggGCCCGGAG-GCg-- -3'
miRNA:   3'- -CCaUCGCCGUCa-----------UGGGCUUCaCGaag -5'
23689 3' -53.5 NC_005261.1 + 80654 0.68 0.910748
Target:  5'- aGUAGCuGguGUGCUCGcGGUGCg-- -3'
miRNA:   3'- cCAUCGcCguCAUGGGCuUCACGaag -5'
23689 3' -53.5 NC_005261.1 + 62267 0.68 0.904463
Target:  5'- uGGUAGCGGC---GCCCGuuGUGgUa- -3'
miRNA:   3'- -CCAUCGCCGucaUGGGCuuCACgAag -5'
23689 3' -53.5 NC_005261.1 + 49397 0.68 0.904463
Target:  5'- --cAGCGuGCAGcGCUCGAagaGGUGCUUg -3'
miRNA:   3'- ccaUCGC-CGUCaUGGGCU---UCACGAAg -5'
23689 3' -53.5 NC_005261.1 + 74816 0.68 0.897931
Target:  5'- cGUGGCGGaGGUGgCCGccGUGCUc- -3'
miRNA:   3'- cCAUCGCCgUCAUgGGCuuCACGAag -5'
23689 3' -53.5 NC_005261.1 + 41114 0.68 0.897931
Target:  5'- ---cGCGGCGG-GCCCG-AGcGCUUCc -3'
miRNA:   3'- ccauCGCCGUCaUGGGCuUCaCGAAG- -5'
23689 3' -53.5 NC_005261.1 + 11482 0.68 0.88414
Target:  5'- gGGgcggGGCGGgGGUGCCgGcucGAG-GCUUCu -3'
miRNA:   3'- -CCa---UCGCCgUCAUGGgC---UUCaCGAAG- -5'
23689 3' -53.5 NC_005261.1 + 1447 0.68 0.88414
Target:  5'- --cAGCGGCGGcGCCuCGgcGUGCg-- -3'
miRNA:   3'- ccaUCGCCGUCaUGG-GCuuCACGaag -5'
23689 3' -53.5 NC_005261.1 + 36828 0.68 0.88414
Target:  5'- cGGUAuGCGGUgccGGcGCCCGggG-GCUa- -3'
miRNA:   3'- -CCAU-CGCCG---UCaUGGGCuuCaCGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.