miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 3' -63.2 NC_005261.1 + 28161 0.66 0.499991
Target:  5'- -cGCCGCUcgggcgcccCCCGUcucGCUGCGCGCc- -3'
miRNA:   3'- caCGGCGA---------GGGCGuc-CGACGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 75532 0.66 0.509401
Target:  5'- -cGCCGCg-CUGCAgcGGCUGCGCGu-- -3'
miRNA:   3'- caCGGCGagGGCGU--CCGACGCGUgca -5'
23690 3' -63.2 NC_005261.1 + 98480 0.66 0.509401
Target:  5'- -gGCCGUcCuCCGCGGGCUcGgGCGgGUa -3'
miRNA:   3'- caCGGCGaG-GGCGUCCGA-CgCGUgCA- -5'
23690 3' -63.2 NC_005261.1 + 2662 0.66 0.513186
Target:  5'- -gGCgGCUCCCGCcgcgcuggggacccGGCgGCGCGCc- -3'
miRNA:   3'- caCGgCGAGGGCGu-------------CCGaCGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 113305 0.66 0.509401
Target:  5'- cUGCCGCgggCCUGgGcccGGCUGCGCGa-- -3'
miRNA:   3'- cACGGCGa--GGGCgU---CCGACGCGUgca -5'
23690 3' -63.2 NC_005261.1 + 10512 0.66 0.499991
Target:  5'- -gGCCGC-CgCUGCGGGCcccgcgGCGCGCu- -3'
miRNA:   3'- caCGGCGaG-GGCGUCCGa-----CGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 134518 0.66 0.518885
Target:  5'- -aGCCuGCgCCUGCAGcuGCUGgGCGCGc -3'
miRNA:   3'- caCGG-CGaGGGCGUC--CGACgCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 64053 0.66 0.509401
Target:  5'- -cGCCGCguggUgCGCcaccGGCUGCcGCACGg -3'
miRNA:   3'- caCGGCGa---GgGCGu---CCGACG-CGUGCa -5'
23690 3' -63.2 NC_005261.1 + 59426 0.66 0.499991
Target:  5'- cUGUCGCgcggCCCgGCAGGCgccgGCagcaGCGCGg -3'
miRNA:   3'- cACGGCGa---GGG-CGUCCGa---CG----CGUGCa -5'
23690 3' -63.2 NC_005261.1 + 10482 0.66 0.499991
Target:  5'- -gGCCGg-CCCGCugcaccGGCuuuUGCGCGCGg -3'
miRNA:   3'- caCGGCgaGGGCGu-----CCG---ACGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 35775 0.66 0.509401
Target:  5'- -gGCCGagacaggaggCCCGCGGGCgccaugGCGCGgGa -3'
miRNA:   3'- caCGGCga--------GGGCGUCCGa-----CGCGUgCa -5'
23690 3' -63.2 NC_005261.1 + 46938 0.66 0.509401
Target:  5'- gGUGCucaCGCggCCCGCGGGCcaguccGCGC-CGUc -3'
miRNA:   3'- -CACG---GCGa-GGGCGUCCGa-----CGCGuGCA- -5'
23690 3' -63.2 NC_005261.1 + 28556 0.66 0.509401
Target:  5'- cUGCucgaCGCggCCCGcCGGGCcgagGCGCGCGa -3'
miRNA:   3'- cACG----GCGa-GGGC-GUCCGa---CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 133837 0.66 0.509401
Target:  5'- -gGCCGCgugCgCGCcguGGCcgGCGCGCGc -3'
miRNA:   3'- caCGGCGa--GgGCGu--CCGa-CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 118412 0.66 0.499991
Target:  5'- -cGCCGCagCCGCGcuGGCUGuCGCcgccGCGg -3'
miRNA:   3'- caCGGCGagGGCGU--CCGAC-GCG----UGCa -5'
23690 3' -63.2 NC_005261.1 + 116536 0.66 0.499991
Target:  5'- -cGCCGCUCCgCGCcc---GCGCGCGUc -3'
miRNA:   3'- caCGGCGAGG-GCGuccgaCGCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 33767 0.66 0.509401
Target:  5'- -cGCuCGCggggCCCGC-GGCgaGCGCugGg -3'
miRNA:   3'- caCG-GCGa---GGGCGuCCGa-CGCGugCa -5'
23690 3' -63.2 NC_005261.1 + 102925 0.66 0.547732
Target:  5'- -cGCCGCUUCgCGCAGcgccgccgccGCUGCG-GCGg -3'
miRNA:   3'- caCGGCGAGG-GCGUC----------CGACGCgUGCa -5'
23690 3' -63.2 NC_005261.1 + 62121 0.66 0.499991
Target:  5'- -cGCCG-UCCUGCAGGCccUGCGUcaGCa- -3'
miRNA:   3'- caCGGCgAGGGCGUCCG--ACGCG--UGca -5'
23690 3' -63.2 NC_005261.1 + 63553 0.66 0.499991
Target:  5'- -cGCCGUgCCCGCuGGCgcgGCcgGCAUGa -3'
miRNA:   3'- caCGGCGaGGGCGuCCGa--CG--CGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.