miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 3' -63.2 NC_005261.1 + 460 0.66 0.538055
Target:  5'- -gGCCGCgacggCCgGCGGGaugGCGCGgGg -3'
miRNA:   3'- caCGGCGa----GGgCGUCCga-CGCGUgCa -5'
23690 3' -63.2 NC_005261.1 + 1343 0.67 0.475898
Target:  5'- -cGCCGCgccugcaccagcgucUCCCGCGGGCccugGUcCGCGUc -3'
miRNA:   3'- caCGGCG---------------AGGGCGUCCGa---CGcGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 1464 0.67 0.490659
Target:  5'- cGUGCgGCUCCaGCAGcGCgGcCGCGCa- -3'
miRNA:   3'- -CACGgCGAGGgCGUC-CGaC-GCGUGca -5'
23690 3' -63.2 NC_005261.1 + 2397 0.68 0.436503
Target:  5'- -gGCgGCgagcgcgCCCGCGGGCccCGCGCGg -3'
miRNA:   3'- caCGgCGa------GGGCGUCCGacGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 2541 0.72 0.235862
Target:  5'- -gGCCGCcagCgCCGCGGcGCUGgGCGCGg -3'
miRNA:   3'- caCGGCGa--G-GGCGUC-CGACgCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 2662 0.66 0.513186
Target:  5'- -gGCgGCUCCCGCcgcgcuggggacccGGCgGCGCGCc- -3'
miRNA:   3'- caCGgCGAGGGCGu-------------CCGaCGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 3393 0.7 0.30114
Target:  5'- -aGCCGCgccggcacuuccgCCgGCGGGCUgaagaGCGCGCGg -3'
miRNA:   3'- caCGGCGa------------GGgCGUCCGA-----CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 3813 0.73 0.204446
Target:  5'- -aGCCGCUCgcgcgcugCCGCGGGCccggGCGCugGc -3'
miRNA:   3'- caCGGCGAG--------GGCGUCCGa---CGCGugCa -5'
23690 3' -63.2 NC_005261.1 + 4294 0.69 0.35447
Target:  5'- -gGCCGCgggcCCCGCGGccgccGCguaGCGCGCGg -3'
miRNA:   3'- caCGGCGa---GGGCGUC-----CGa--CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 10482 0.66 0.499991
Target:  5'- -gGCCGg-CCCGCugcaccGGCuuuUGCGCGCGg -3'
miRNA:   3'- caCGGCgaGGGCGu-----CCG---ACGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 10512 0.66 0.499991
Target:  5'- -gGCCGC-CgCUGCGGGCcccgcgGCGCGCu- -3'
miRNA:   3'- caCGGCGaG-GGCGUCCGa-----CGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 11219 0.68 0.427813
Target:  5'- -cGCCGCguggcccCCCGCGGGC-GCGCu--- -3'
miRNA:   3'- caCGGCGa------GGGCGUCCGaCGCGugca -5'
23690 3' -63.2 NC_005261.1 + 13659 0.73 0.199576
Target:  5'- cGUGCCGC-CgCCGCGGGggGgGCGCGg -3'
miRNA:   3'- -CACGGCGaG-GGCGUCCgaCgCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 14793 1.06 0.000871
Target:  5'- gGUGCCGCUCCCGCAGGCUGCGCACGUc -3'
miRNA:   3'- -CACGGCGAGGGCGUCCGACGCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 15492 0.74 0.168249
Target:  5'- -cGCCGCUCgCUGCGGGCgggGCGUgugucgGCGUg -3'
miRNA:   3'- caCGGCGAG-GGCGUCCGa--CGCG------UGCA- -5'
23690 3' -63.2 NC_005261.1 + 15987 0.71 0.258987
Target:  5'- -gGCCGCUCaCC-CGGGCaGCGCGCuGUa -3'
miRNA:   3'- caCGGCGAG-GGcGUCCGaCGCGUG-CA- -5'
23690 3' -63.2 NC_005261.1 + 18537 0.67 0.481408
Target:  5'- -gGCgGCgUCCCGCGGcccGCUGgGCACu- -3'
miRNA:   3'- caCGgCG-AGGGCGUC---CGACgCGUGca -5'
23690 3' -63.2 NC_005261.1 + 20331 0.68 0.392467
Target:  5'- -aGCCGCgcacgagcgacgCCCGC-GGCUGC-CGCGa -3'
miRNA:   3'- caCGGCGa-----------GGGCGuCCGACGcGUGCa -5'
23690 3' -63.2 NC_005261.1 + 21815 0.74 0.160143
Target:  5'- -gGCCGggCCCGC-GGCggGCGCGCGUg -3'
miRNA:   3'- caCGGCgaGGGCGuCCGa-CGCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 23200 0.72 0.224962
Target:  5'- -cGCCGCggggCCCGCAgcggcGGCcGCGCGCa- -3'
miRNA:   3'- caCGGCGa---GGGCGU-----CCGaCGCGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.