miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 3' -63.2 NC_005261.1 + 102925 0.66 0.547732
Target:  5'- -cGCCGCUUCgCGCAGcgccgccgccGCUGCG-GCGg -3'
miRNA:   3'- caCGGCGAGG-GCGUC----------CGACGCgUGCa -5'
23690 3' -63.2 NC_005261.1 + 102961 0.74 0.160143
Target:  5'- -gGCCGCgggCgCCGCGGGCUccgccgccGCGCGCGa -3'
miRNA:   3'- caCGGCGa--G-GGCGUCCGA--------CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 30167 0.74 0.164151
Target:  5'- -cGCCGCgCCCGCcGcGCUGCGCGCc- -3'
miRNA:   3'- caCGGCGaGGGCGuC-CGACGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 15492 0.74 0.168249
Target:  5'- -cGCCGCUCgCUGCGGGCgggGCGUgugucgGCGUg -3'
miRNA:   3'- caCGGCGAG-GGCGUCCGa--CGCG------UGCA- -5'
23690 3' -63.2 NC_005261.1 + 107246 0.74 0.172439
Target:  5'- -aGCCGCccaCCCGCGGGCgcgcGgGCACGg -3'
miRNA:   3'- caCGGCGa--GGGCGUCCGa---CgCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 32546 0.74 0.176721
Target:  5'- -gGCCGCgg-CGCGGGCcgGCGCGCGUg -3'
miRNA:   3'- caCGGCGaggGCGUCCGa-CGCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 121784 0.74 0.176721
Target:  5'- -gGCCGCggCCgGCGGGCUGgGCAgGg -3'
miRNA:   3'- caCGGCGa-GGgCGUCCGACgCGUgCa -5'
23690 3' -63.2 NC_005261.1 + 92945 0.73 0.19014
Target:  5'- cUGCCcgGCgUCCCGgacaaAGGCUGCGCACGc -3'
miRNA:   3'- cACGG--CG-AGGGCg----UCCGACGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 133017 0.73 0.19014
Target:  5'- -cGCUGCgccaCCCGCGGGCgcgccaccGCGCACGc -3'
miRNA:   3'- caCGGCGa---GGGCGUCCGa-------CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 21815 0.74 0.160143
Target:  5'- -gGCCGggCCCGC-GGCggGCGCGCGUg -3'
miRNA:   3'- caCGGCgaGGGCGuCCGa-CGCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 83041 0.75 0.15239
Target:  5'- -gGCCGCUCgCCGCGGGagggggcuccCUGCGCGCc- -3'
miRNA:   3'- caCGGCGAG-GGCGUCC----------GACGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 38952 0.75 0.148643
Target:  5'- -gGCCGCggCgCGCGGGCUGCGCAg-- -3'
miRNA:   3'- caCGGCGa-GgGCGUCCGACGCGUgca -5'
23690 3' -63.2 NC_005261.1 + 101788 0.86 0.025945
Target:  5'- cGUGCCGC-CCgGCgGGGCUGCGCACGUa -3'
miRNA:   3'- -CACGGCGaGGgCG-UCCGACGCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 69787 0.8 0.06549
Target:  5'- -aGCCGCUCCCGCGGcGCgcgGCgGCGCGa -3'
miRNA:   3'- caCGGCGAGGGCGUC-CGa--CG-CGUGCa -5'
23690 3' -63.2 NC_005261.1 + 36995 0.79 0.078589
Target:  5'- -aGCCGgagCCCGCGGGCUGCGCGgGg -3'
miRNA:   3'- caCGGCga-GGGCGUCCGACGCGUgCa -5'
23690 3' -63.2 NC_005261.1 + 37216 0.78 0.087164
Target:  5'- cUGUgGCUCCCGCGGGCuUGCGCggcGCGg -3'
miRNA:   3'- cACGgCGAGGGCGUCCG-ACGCG---UGCa -5'
23690 3' -63.2 NC_005261.1 + 82330 0.78 0.099138
Target:  5'- -aGCCGCUCCgCGUAGcGCUgccgGCGCACGUc -3'
miRNA:   3'- caCGGCGAGG-GCGUC-CGA----CGCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 46978 0.77 0.101712
Target:  5'- cUGCCGCcgCCCGCcGGCaGCGCGCGc -3'
miRNA:   3'- cACGGCGa-GGGCGuCCGaCGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 106163 0.77 0.115554
Target:  5'- -cGCCGCUCCgCGCuaauacuaggGGGCgccGCGCGCGUg -3'
miRNA:   3'- caCGGCGAGG-GCG----------UCCGa--CGCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 59092 0.75 0.14498
Target:  5'- -cGCCGCgcccucgcgCUCGCAGGC-GCGCGCGa -3'
miRNA:   3'- caCGGCGa--------GGGCGUCCGaCGCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.