miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 5' -59.7 NC_005261.1 + 2283 0.66 0.678124
Target:  5'- -gGGcgGCGCCGccAGCGCcuccccgGGCAGCGg -3'
miRNA:   3'- uaUCuaCGCGGCccUCGUG-------CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 1060 0.66 0.668966
Target:  5'- uUAGcgGCGCgGGGGGC-UGGCcccgcuccagGGCGa -3'
miRNA:   3'- uAUCuaCGCGgCCCUCGuGCCG----------UCGU- -5'
23690 5' -59.7 NC_005261.1 + 4825 0.66 0.689274
Target:  5'- -----cGCGuuGGGcGCagGCGGCGGCGu -3'
miRNA:   3'- uaucuaCGCggCCCuCG--UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 100725 0.66 0.658763
Target:  5'- -cGGccGCGCCGcGcGcgcGCGCGGCGGCGc -3'
miRNA:   3'- uaUCuaCGCGGC-C-Cu--CGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 95659 0.66 0.67914
Target:  5'- --cGcgGCGCCGcgacGGGCGCGGguGUg -3'
miRNA:   3'- uauCuaCGCGGCc---CUCGUGCCguCGu -5'
23690 5' -59.7 NC_005261.1 + 312 0.66 0.67914
Target:  5'- -nGGcUGCGgCGGcGGCuGCGGCGGCGg -3'
miRNA:   3'- uaUCuACGCgGCCcUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 35201 0.66 0.689274
Target:  5'- -aGGAgcagGCuuGCCGGGAGU--GGCGGCu -3'
miRNA:   3'- uaUCUa---CG--CGGCCCUCGugCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 71 0.66 0.67914
Target:  5'- --cGgcGCGCgCGGGGGCG-GGguGCGg -3'
miRNA:   3'- uauCuaCGCG-GCCCUCGUgCCguCGU- -5'
23690 5' -59.7 NC_005261.1 + 528 0.66 0.668966
Target:  5'- -cGGgcGgGCgGGGGGCAgGGCGGaCGg -3'
miRNA:   3'- uaUCuaCgCGgCCCUCGUgCCGUC-GU- -5'
23690 5' -59.7 NC_005261.1 + 134989 0.66 0.658763
Target:  5'- --cGggGcCGCCGGGgcgccccuGGCGCGGCGGg- -3'
miRNA:   3'- uauCuaC-GCGGCCC--------UCGUGCCGUCgu -5'
23690 5' -59.7 NC_005261.1 + 73214 0.66 0.658763
Target:  5'- -----gGCGCCucgaGGGGCGCGGUGGCc -3'
miRNA:   3'- uaucuaCGCGGc---CCUCGUGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 137754 0.66 0.67914
Target:  5'- --cGgcGCGCgCGGGGGCG-GGguGCGg -3'
miRNA:   3'- uauCuaCGCG-GCCCUCGUgCCguCGU- -5'
23690 5' -59.7 NC_005261.1 + 138199 0.66 0.668966
Target:  5'- -cGGgcGgGCgGGGGGCAgGGCGGaCGg -3'
miRNA:   3'- uaUCuaCgCGgCCCUCGUgCCGUC-GU- -5'
23690 5' -59.7 NC_005261.1 + 115417 0.66 0.67914
Target:  5'- -gGGcgGCaGCCGGGGcCGCGGCccgAGCu -3'
miRNA:   3'- uaUCuaCG-CGGCCCUcGUGCCG---UCGu -5'
23690 5' -59.7 NC_005261.1 + 74712 0.66 0.67914
Target:  5'- -cGGgcGCGgaaCCGGGc-CGCGGCAGCGg -3'
miRNA:   3'- uaUCuaCGC---GGCCCucGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 31439 0.66 0.687251
Target:  5'- cUGGcgGCGCCGcccggcgaggacGAGCGcCGGCGGCc -3'
miRNA:   3'- uAUCuaCGCGGCc-----------CUCGU-GCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 42670 0.66 0.658763
Target:  5'- -aAGcgGCgGCCGGGccgccGC-CGGCAGCc -3'
miRNA:   3'- uaUCuaCG-CGGCCCu----CGuGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 3356 0.66 0.657741
Target:  5'- --cGgcGCGCCGGccuucagggccgcGAGCGCGGCcGCc -3'
miRNA:   3'- uauCuaCGCGGCC-------------CUCGUGCCGuCGu -5'
23690 5' -59.7 NC_005261.1 + 1400 0.66 0.689274
Target:  5'- -----gGCGCCGcGGc-CGCGGCGGCGg -3'
miRNA:   3'- uaucuaCGCGGC-CCucGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 86479 0.66 0.67914
Target:  5'- gAUGGAcGCgGCCGGGccGGCGCcugucuGCGGCAg -3'
miRNA:   3'- -UAUCUaCG-CGGCCC--UCGUGc-----CGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.