miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 5' -59.7 NC_005261.1 + 14828 1.06 0.001463
Target:  5'- uAUAGAUGCGCCGGGAGCACGGCAGCAg -3'
miRNA:   3'- -UAUCUACGCGGCCCUCGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 98183 0.81 0.095924
Target:  5'- uUGGAgcCGCCGGGGGCGCGGCGGgCAg -3'
miRNA:   3'- uAUCUacGCGGCCCUCGUGCCGUC-GU- -5'
23690 5' -59.7 NC_005261.1 + 126947 0.78 0.134826
Target:  5'- -cAGggGCGCCGGGcgcgGGgGCGGCAGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCC----UCgUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 35703 0.77 0.157311
Target:  5'- --cGGUGgGCCGGGGGCuCGGUGGCGg -3'
miRNA:   3'- uauCUACgCGGCCCUCGuGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 97998 0.77 0.16553
Target:  5'- aGUGGGagGCGgCGGGGGCGCuGGCGGCGa -3'
miRNA:   3'- -UAUCUa-CGCgGCCCUCGUG-CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 125940 0.77 0.178582
Target:  5'- gGUAGccgcugGCGCgGGGucGCACGGCAGCAc -3'
miRNA:   3'- -UAUCua----CGCGgCCCu-CGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 74040 0.76 0.187784
Target:  5'- gAUGGAccagcGCGCCgGGGGGCuGCGGCAGCu -3'
miRNA:   3'- -UAUCUa----CGCGG-CCCUCG-UGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 137007 0.76 0.207444
Target:  5'- ---cGUGCgGCCGGaGAGCGCGGcCAGCAg -3'
miRNA:   3'- uaucUACG-CGGCC-CUCGUGCC-GUCGU- -5'
23690 5' -59.7 NC_005261.1 + 3851 0.75 0.220076
Target:  5'- -cAGcgGCGCCGGcgccgcgcggccggcGAGCACGGCGcGCAg -3'
miRNA:   3'- uaUCuaCGCGGCC---------------CUCGUGCCGU-CGU- -5'
23690 5' -59.7 NC_005261.1 + 5490 0.75 0.234496
Target:  5'- -----cGCGCCGGGGGguagcuggggcCGCGGCAGCGg -3'
miRNA:   3'- uaucuaCGCGGCCCUC-----------GUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 95762 0.74 0.252111
Target:  5'- -cGGggGCGCCGGGAGCcucGCGcGCuGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCCUCG---UGC-CGuCGU- -5'
23690 5' -59.7 NC_005261.1 + 51004 0.74 0.26445
Target:  5'- cGUGGgcGCGgCGGGAGCuCGGCgAGCGc -3'
miRNA:   3'- -UAUCuaCGCgGCCCUCGuGCCG-UCGU- -5'
23690 5' -59.7 NC_005261.1 + 58016 0.73 0.307223
Target:  5'- cGUGGAaGUGCCgcggcggcagcuccaGGGAGCGCGGCcGCGu -3'
miRNA:   3'- -UAUCUaCGCGG---------------CCCUCGUGCCGuCGU- -5'
23690 5' -59.7 NC_005261.1 + 72449 0.73 0.311493
Target:  5'- -cGGggGCGCCcgcGGcGAGCGCGGCgAGCGc -3'
miRNA:   3'- uaUCuaCGCGG---CC-CUCGUGCCG-UCGU- -5'
23690 5' -59.7 NC_005261.1 + 132622 0.73 0.318711
Target:  5'- -aGGggGCGCUGGcgccgaggacgcGGGCGCGGCGGCc -3'
miRNA:   3'- uaUCuaCGCGGCC------------CUCGUGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 3641 0.72 0.326053
Target:  5'- -cGGGUGCGCCGcuagcgcgucuGGAGCGCaGGCcGCGg -3'
miRNA:   3'- uaUCUACGCGGC-----------CCUCGUG-CCGuCGU- -5'
23690 5' -59.7 NC_005261.1 + 138054 0.72 0.33352
Target:  5'- gGUGGcgGCGgCGGcGGCgGCGGCGGCAg -3'
miRNA:   3'- -UAUCuaCGCgGCCcUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 383 0.72 0.33352
Target:  5'- gGUGGcgGCGgCGGcGGCgGCGGCGGCAg -3'
miRNA:   3'- -UAUCuaCGCgGCCcUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 48312 0.72 0.338821
Target:  5'- -gGGggGCGCgucgggcccgggcuCGGGGGCGCGcGCGGCGa -3'
miRNA:   3'- uaUCuaCGCG--------------GCCCUCGUGC-CGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 69769 0.72 0.3465
Target:  5'- -gGGcgGCGCCGGGgacugAGCcgcucccgcggcgcGCGGCGGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCC-----UCG--------------UGCCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.