miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 5' -59.7 NC_005261.1 + 71 0.66 0.67914
Target:  5'- --cGgcGCGCgCGGGGGCG-GGguGCGg -3'
miRNA:   3'- uauCuaCGCG-GCCCUCGUgCCguCGU- -5'
23690 5' -59.7 NC_005261.1 + 252 0.67 0.648538
Target:  5'- -cGGcUGCGgCGGcGGCuGCGGCGGCGg -3'
miRNA:   3'- uaUCuACGCgGCCcUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 288 0.67 0.648538
Target:  5'- -cGGcUGCGgCGGcGGCuGCGGCGGCGg -3'
miRNA:   3'- uaUCuACGCgGCCcUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 312 0.66 0.67914
Target:  5'- -nGGcUGCGgCGGcGGCuGCGGCGGCGg -3'
miRNA:   3'- uaUCuACGCgGCCcUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 383 0.72 0.33352
Target:  5'- gGUGGcgGCGgCGGcGGCgGCGGCGGCAg -3'
miRNA:   3'- -UAUCuaCGCgGCCcUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 528 0.66 0.668966
Target:  5'- -cGGgcGgGCgGGGGGCAgGGCGGaCGg -3'
miRNA:   3'- uaUCuaCgCGgCCCUCGUgCCGUC-GU- -5'
23690 5' -59.7 NC_005261.1 + 1060 0.66 0.668966
Target:  5'- uUAGcgGCGCgGGGGGC-UGGCcccgcuccagGGCGa -3'
miRNA:   3'- uAUCuaCGCGgCCCUCGuGCCG----------UCGU- -5'
23690 5' -59.7 NC_005261.1 + 1400 0.66 0.689274
Target:  5'- -----gGCGCCGcGGc-CGCGGCGGCGg -3'
miRNA:   3'- uaucuaCGCGGC-CCucGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 1679 0.67 0.6383
Target:  5'- ----uUGCGCCcgucGAGcCGCGGCAGCAc -3'
miRNA:   3'- uaucuACGCGGcc--CUC-GUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 1868 0.67 0.597379
Target:  5'- -aAGAcGCGCCGcgaGGccAGCACGGCGcGCGc -3'
miRNA:   3'- uaUCUaCGCGGC---CC--UCGUGCCGU-CGU- -5'
23690 5' -59.7 NC_005261.1 + 2283 0.66 0.678124
Target:  5'- -gGGcgGCGCCGccAGCGCcuccccgGGCAGCGg -3'
miRNA:   3'- uaUCuaCGCGGCccUCGUG-------CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 2406 0.68 0.577043
Target:  5'- -----cGCGCCcgcGGGccccGCGCGGCGGCGg -3'
miRNA:   3'- uaucuaCGCGG---CCCu---CGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 3356 0.66 0.657741
Target:  5'- --cGgcGCGCCGGccuucagggccgcGAGCGCGGCcGCc -3'
miRNA:   3'- uauCuaCGCGGCC-------------CUCGUGCCGuCGu -5'
23690 5' -59.7 NC_005261.1 + 3641 0.72 0.326053
Target:  5'- -cGGGUGCGCCGcuagcgcgucuGGAGCGCaGGCcGCGg -3'
miRNA:   3'- uaUCUACGCGGC-----------CCUCGUG-CCGuCGU- -5'
23690 5' -59.7 NC_005261.1 + 3721 0.68 0.577043
Target:  5'- -cAGAcGCGCCGcugccGGAcGCGcCGGCGGCGc -3'
miRNA:   3'- uaUCUaCGCGGC-----CCU-CGU-GCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 3851 0.75 0.220076
Target:  5'- -cAGcgGCGCCGGcgccgcgcggccggcGAGCACGGCGcGCAg -3'
miRNA:   3'- uaUCuaCGCGGCC---------------CUCGUGCCGU-CGU- -5'
23690 5' -59.7 NC_005261.1 + 4825 0.66 0.689274
Target:  5'- -----cGCGuuGGGcGCagGCGGCGGCGu -3'
miRNA:   3'- uaucuaCGCggCCCuCG--UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 5490 0.75 0.234496
Target:  5'- -----cGCGCCGGGGGguagcuggggcCGCGGCAGCGg -3'
miRNA:   3'- uaucuaCGCGGCCCUC-----------GUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 5832 0.69 0.526998
Target:  5'- --cGAUgcGCGCCGGGu-UACGGCGGCc -3'
miRNA:   3'- uauCUA--CGCGGCCCucGUGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 6234 0.69 0.482453
Target:  5'- -cAGGUGCGCCcgGGGAgggccugcccgccccGCGgGGCGGCc -3'
miRNA:   3'- uaUCUACGCGG--CCCU---------------CGUgCCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.