miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23692 3' -51.8 NC_005261.1 + 71765 0.66 0.987915
Target:  5'- aCCUccAGCCGGACCgc--GGCCCGc- -3'
miRNA:   3'- -GGGauUUGGUCUGGaacuUCGGGCuc -5'
23692 3' -51.8 NC_005261.1 + 71056 0.66 0.986969
Target:  5'- gCCgUGGGCCAGccGCCgcgcGGcgggcggggcguccgGGCCCGAGa -3'
miRNA:   3'- -GGgAUUUGGUC--UGGaa--CU---------------UCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 30803 0.66 0.98454
Target:  5'- gCUgGGGCCGGaggaGCUgggGggGCCCGGGg -3'
miRNA:   3'- gGGaUUUGGUC----UGGaa-CuuCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 28713 0.66 0.98454
Target:  5'- aCCCgggGGGCCcggGGGCCUcGgcGCCCuccGAGg -3'
miRNA:   3'- -GGGa--UUUGG---UCUGGAaCuuCGGG---CUC- -5'
23692 3' -51.8 NC_005261.1 + 110446 0.66 0.98454
Target:  5'- uCCCgc-ACCGGGCgUUUGGGuGCCUGGGc -3'
miRNA:   3'- -GGGauuUGGUCUG-GAACUU-CGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 135319 0.66 0.98454
Target:  5'- gCCCUGGgcggccguGCUGGACUUUG--GCCCGGa -3'
miRNA:   3'- -GGGAUU--------UGGUCUGGAACuuCGGGCUc -5'
23692 3' -51.8 NC_005261.1 + 35321 0.66 0.984354
Target:  5'- gCUCggggAGGCCGGGCCUccccgugUGcAAGCCCGc- -3'
miRNA:   3'- -GGGa---UUUGGUCUGGA-------AC-UUCGGGCuc -5'
23692 3' -51.8 NC_005261.1 + 933 0.66 0.983978
Target:  5'- cCCCccAGCCGGGCCUcccucuccucccuccGAGCCCGuAGa -3'
miRNA:   3'- -GGGauUUGGUCUGGAac-------------UUCGGGC-UC- -5'
23692 3' -51.8 NC_005261.1 + 128323 0.66 0.982605
Target:  5'- ----cAACCAgGGCCUgcgGggGCuCCGAGa -3'
miRNA:   3'- gggauUUGGU-CUGGAa--CuuCG-GGCUC- -5'
23692 3' -51.8 NC_005261.1 + 37867 0.66 0.980493
Target:  5'- cCCCgacGCCuggcGGCgCgugcUGGAGCCCGAGc -3'
miRNA:   3'- -GGGauuUGGu---CUG-Ga---ACUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 31559 0.66 0.980493
Target:  5'- gCCUGGGCCGGGuCCUggacgGgcGCgCCGGa -3'
miRNA:   3'- gGGAUUUGGUCU-GGAa----CuuCG-GGCUc -5'
23692 3' -51.8 NC_005261.1 + 124946 0.66 0.980493
Target:  5'- gCgCUGuGCCGGcGCCcUGGAGCCCGc- -3'
miRNA:   3'- -GgGAUuUGGUC-UGGaACUUCGGGCuc -5'
23692 3' -51.8 NC_005261.1 + 11667 0.67 0.975703
Target:  5'- cCCCUGAACCccGCC--GGAGCCCc-- -3'
miRNA:   3'- -GGGAUUUGGucUGGaaCUUCGGGcuc -5'
23692 3' -51.8 NC_005261.1 + 14292 0.67 0.975703
Target:  5'- gCCaAGGCCGgccccGACCggu-AGCCCGAGg -3'
miRNA:   3'- gGGaUUUGGU-----CUGGaacuUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 6213 0.67 0.970106
Target:  5'- gCCCgc--CCAGACCUggcgguccaggUGc-GCCCGGGg -3'
miRNA:   3'- -GGGauuuGGUCUGGA-----------ACuuCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 63918 0.67 0.970106
Target:  5'- gUCCU--GCCGcacGACCgugagcccGAAGCCCGGGu -3'
miRNA:   3'- -GGGAuuUGGU---CUGGaa------CUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 33475 0.67 0.970106
Target:  5'- gCCgcAGCCGGGCCcgcucgcGggGCCCGcGa -3'
miRNA:   3'- gGGauUUGGUCUGGaa-----CuuCGGGCuC- -5'
23692 3' -51.8 NC_005261.1 + 97345 0.67 0.969804
Target:  5'- gCCaGAGCCAauGACCgUGGggucuacGGCCCGGGc -3'
miRNA:   3'- gGGaUUUGGU--CUGGaACU-------UCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 20713 0.67 0.966985
Target:  5'- -gCUGAACuCGGGCCgcgcUGggGCUCGGc -3'
miRNA:   3'- ggGAUUUG-GUCUGGa---ACuuCGGGCUc -5'
23692 3' -51.8 NC_005261.1 + 33740 0.68 0.95626
Target:  5'- cCCCUcgcgcggcgccgGGGCCGGGCCcgcucgcGggGCCCGcGg -3'
miRNA:   3'- -GGGA------------UUUGGUCUGGaa-----CuuCGGGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.