miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23692 5' -70.9 NC_005261.1 + 101445 0.66 0.263084
Target:  5'- gGCGCGGuCCagCGCUGGCCCCagcgccgccgGcGGCg -3'
miRNA:   3'- gCGCGCCcGG--GCGGCCGGGGga--------C-CCG- -5'
23692 5' -70.9 NC_005261.1 + 120662 0.66 0.263084
Target:  5'- gGCGCGGGCgCGCCugugaucucgcGcGCgCCCCggcggaaaGGGUg -3'
miRNA:   3'- gCGCGCCCGgGCGG-----------C-CG-GGGGa-------CCCG- -5'
23692 5' -70.9 NC_005261.1 + 88434 0.66 0.268828
Target:  5'- -uCGCGGGCCaccgcuGCUGGCCgCgCCgcgugagcgugUGGGCg -3'
miRNA:   3'- gcGCGCCCGGg-----CGGCCGG-G-GG-----------ACCCG- -5'
23692 5' -70.9 NC_005261.1 + 107655 0.66 0.263084
Target:  5'- uGCGCGcGCaaacuCCG-CGGCCCCgCcGGGCg -3'
miRNA:   3'- gCGCGCcCG-----GGCgGCCGGGG-GaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 83004 0.66 0.305423
Target:  5'- uCGCGCaccGaGCCgccguCGCCGGCgCCCCcgggaGGGCc -3'
miRNA:   3'- -GCGCGc--C-CGG-----GCGGCCG-GGGGa----CCCG- -5'
23692 5' -70.9 NC_005261.1 + 51142 0.66 0.268828
Target:  5'- gGCGCGaaaGCCC-CCGGggCCCUGcGGCg -3'
miRNA:   3'- gCGCGCc--CGGGcGGCCggGGGAC-CCG- -5'
23692 5' -70.9 NC_005261.1 + 70813 0.66 0.263084
Target:  5'- cCGCGCcggcggccccGGGCgCGCCGGCgcgcgcguacgcCUCCUcagguccaGGGCg -3'
miRNA:   3'- -GCGCG----------CCCGgGCGGCCG------------GGGGA--------CCCG- -5'
23692 5' -70.9 NC_005261.1 + 53038 0.66 0.263654
Target:  5'- gGCGCcgGGGCagCCGUCGGgagggcagugcuccaCCCCgGGGCg -3'
miRNA:   3'- gCGCG--CCCG--GGCGGCCg--------------GGGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 73826 0.66 0.261381
Target:  5'- cCGCGCcuagcccggcucuuGGGCgaGUCGGCgCCCCgGaGGCu -3'
miRNA:   3'- -GCGCG--------------CCCGggCGGCCG-GGGGaC-CCG- -5'
23692 5' -70.9 NC_005261.1 + 55416 0.66 0.262515
Target:  5'- aCGCGCGcGCCgGCUGGCgccaccgcgagCCCUccgagcggcgcggUGGGCc -3'
miRNA:   3'- -GCGCGCcCGGgCGGCCG-----------GGGG-------------ACCCG- -5'
23692 5' -70.9 NC_005261.1 + 74073 0.66 0.267094
Target:  5'- gCGCGaCGcGGCCCGgcuugugcgcgaccUCGcCCCCCcGGGCc -3'
miRNA:   3'- -GCGC-GC-CCGGGC--------------GGCcGGGGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 3513 0.66 0.268828
Target:  5'- aGCGCGGccgccuccaGCgCGgCGGCCgCCUcGGCg -3'
miRNA:   3'- gCGCGCC---------CGgGCgGCCGGgGGAcCCG- -5'
23692 5' -70.9 NC_005261.1 + 82371 0.66 0.268828
Target:  5'- gCGCGCGcGCgCCGCCaGcGCCgCCCagcccgcgGGGCc -3'
miRNA:   3'- -GCGCGCcCG-GGCGG-C-CGG-GGGa-------CCCG- -5'
23692 5' -70.9 NC_005261.1 + 4294 0.66 0.267094
Target:  5'- gGcCGCGGGCCCcgcgGCCgccgcguagcgcgcGGCCgCCUcgcggaucucgGGGCa -3'
miRNA:   3'- gC-GCGCCCGGG----CGG--------------CCGGgGGA-----------CCCG- -5'
23692 5' -70.9 NC_005261.1 + 51310 0.66 0.263084
Target:  5'- uCGCGCacgccGGCgCCGCCGccGCCUUCgucGGGCu -3'
miRNA:   3'- -GCGCGc----CCG-GGCGGC--CGGGGGa--CCCG- -5'
23692 5' -70.9 NC_005261.1 + 114990 0.66 0.268828
Target:  5'- --gGCGGGCCgGCCgccgcggccccGGCCCCgCgGaGGCc -3'
miRNA:   3'- gcgCGCCCGGgCGG-----------CCGGGG-GaC-CCG- -5'
23692 5' -70.9 NC_005261.1 + 135454 0.66 0.268828
Target:  5'- gGCGCGGGCgCUGCgGGaCCUCguaCUGcgcGGCg -3'
miRNA:   3'- gCGCGCCCG-GGCGgCC-GGGG---GAC---CCG- -5'
23692 5' -70.9 NC_005261.1 + 48462 0.66 0.268828
Target:  5'- gGCGCGGucaacGCCgGCCGaGUCCagCaGGGCg -3'
miRNA:   3'- gCGCGCC-----CGGgCGGC-CGGGg-GaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 1567 0.66 0.268828
Target:  5'- cCGCaGC-GGCgCGCCGaGCCCCCaGcGGUu -3'
miRNA:   3'- -GCG-CGcCCGgGCGGC-CGGGGGaC-CCG- -5'
23692 5' -70.9 NC_005261.1 + 12489 0.66 0.263084
Target:  5'- uGUGUGGaCUCuCCauGGCCCCCcGGGCg -3'
miRNA:   3'- gCGCGCCcGGGcGG--CCGGGGGaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.