miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23692 5' -70.9 NC_005261.1 + 12725 1.1 0.000132
Target:  5'- gCGCGCGGGCCCGCCGGCCCCCUGGGCg -3'
miRNA:   3'- -GCGCGCCCGGGCGGCCGGGGGACCCG- -5'
23692 5' -70.9 NC_005261.1 + 115843 0.81 0.020658
Target:  5'- gGCGCGuuGGCCCGCgCGGCCCCCgccGaGGCg -3'
miRNA:   3'- gCGCGC--CCGGGCG-GCCGGGGGa--C-CCG- -5'
23692 5' -70.9 NC_005261.1 + 23487 0.81 0.022269
Target:  5'- uGCGCGGGCCCGCCugGGCaggcgcgggCCCUGGGa -3'
miRNA:   3'- gCGCGCCCGGGCGG--CCGg--------GGGACCCg -5'
23692 5' -70.9 NC_005261.1 + 13046 0.8 0.025235
Target:  5'- gGCGCGGGgCCGCgCGcGCCCCUgccGGGCg -3'
miRNA:   3'- gCGCGCCCgGGCG-GC-CGGGGGa--CCCG- -5'
23692 5' -70.9 NC_005261.1 + 127566 0.8 0.026527
Target:  5'- gCGUGCGucGGCCCGCaccagGGCgCCCUGGGCg -3'
miRNA:   3'- -GCGCGC--CCGGGCGg----CCGgGGGACCCG- -5'
23692 5' -70.9 NC_005261.1 + 131622 0.8 0.02713
Target:  5'- gCGCGCcuGGcGCCCGCCgcgaggaccgacgGGCCCCCcGGGCg -3'
miRNA:   3'- -GCGCG--CC-CGGGCGG-------------CCGGGGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 127886 0.8 0.027885
Target:  5'- uCGCGcCGGcGCCCGUCgGGCCCgggCCUGGGCu -3'
miRNA:   3'- -GCGC-GCC-CGGGCGG-CCGGG---GGACCCG- -5'
23692 5' -70.9 NC_005261.1 + 17551 0.79 0.031587
Target:  5'- gGCGCGGGCCCGCCguucggcgguGGCCUUgcGGGCg -3'
miRNA:   3'- gCGCGCCCGGGCGG----------CCGGGGgaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 2761 0.78 0.034893
Target:  5'- uCGCgGCGGGCCUcgagGCCcGCCCCCgagGGGCu -3'
miRNA:   3'- -GCG-CGCCCGGG----CGGcCGGGGGa--CCCG- -5'
23692 5' -70.9 NC_005261.1 + 3905 0.78 0.035771
Target:  5'- gGCGCGGGCgCCcgcgccgccggcGCCGGCCUCCggguaggccaUGGGCg -3'
miRNA:   3'- gCGCGCCCG-GG------------CGGCCGGGGG----------ACCCG- -5'
23692 5' -70.9 NC_005261.1 + 36578 0.78 0.036671
Target:  5'- aGCGgGGGCCCGCCgcGGCCaCCggggggGGGCa -3'
miRNA:   3'- gCGCgCCCGGGCGG--CCGGgGGa-----CCCG- -5'
23692 5' -70.9 NC_005261.1 + 117717 0.78 0.039506
Target:  5'- gCGCGCGGGCCCGCaagCGGCCgCgCgCUGGcGCc -3'
miRNA:   3'- -GCGCGCCCGGGCG---GCCGG-G-G-GACC-CG- -5'
23692 5' -70.9 NC_005261.1 + 88825 0.77 0.042555
Target:  5'- gGCgGCGGcGCgCGCCGGCCCggcgucggcuaCCUGGGCc -3'
miRNA:   3'- gCG-CGCC-CGgGCGGCCGGG-----------GGACCCG- -5'
23692 5' -70.9 NC_005261.1 + 109875 0.77 0.042555
Target:  5'- aGCG-GGGCCCGCgGGCgggcgCCCCgGGGCu -3'
miRNA:   3'- gCGCgCCCGGGCGgCCG-----GGGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 106554 0.77 0.042555
Target:  5'- cCGCGUccGGGCCggcgcgCGCCGGCCCCg-GGGCc -3'
miRNA:   3'- -GCGCG--CCCGG------GCGGCCGGGGgaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 21788 0.77 0.045834
Target:  5'- gGCGCGGGCCgccgcagcCGCCGGCCgggccgggCCCgcggcGGGCg -3'
miRNA:   3'- gCGCGCCCGG--------GCGGCCGG--------GGGa----CCCG- -5'
23692 5' -70.9 NC_005261.1 + 38916 0.77 0.049359
Target:  5'- gCGCGCGGGCCCgcgcgccaaGCCGGCggCC-GGGCg -3'
miRNA:   3'- -GCGCGCCCGGG---------CGGCCGggGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 4501 0.76 0.050591
Target:  5'- uGCGCGGGCCCcaGUCGcGCgCCCgcgcGGGCg -3'
miRNA:   3'- gCGCGCCCGGG--CGGC-CGgGGGa---CCCG- -5'
23692 5' -70.9 NC_005261.1 + 83839 0.76 0.050591
Target:  5'- cCGCugGCGGG-CCG-CGGCCCCgCUGGGCu -3'
miRNA:   3'- -GCG--CGCCCgGGCgGCCGGGG-GACCCG- -5'
23692 5' -70.9 NC_005261.1 + 134108 0.76 0.052756
Target:  5'- gGCGCGcGCUCGCCGccgacuuccgccucGaCCCCCUGGGCu -3'
miRNA:   3'- gCGCGCcCGGGCGGC--------------C-GGGGGACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.