miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23692 5' -70.9 NC_005261.1 + 17 0.67 0.241103
Target:  5'- uGCaGCGGGCCcCGCgCGaCCCCggggGGGUg -3'
miRNA:   3'- gCG-CGCCCGG-GCG-GCcGGGGga--CCCG- -5'
23692 5' -70.9 NC_005261.1 + 97 0.75 0.063116
Target:  5'- gCGCGCccccGGGCCCcgccgcccgcGCCGGCgccgCCCCUGGuGCu -3'
miRNA:   3'- -GCGCG----CCCGGG----------CGGCCG----GGGGACC-CG- -5'
23692 5' -70.9 NC_005261.1 + 230 0.69 0.164248
Target:  5'- -uCGCGGGCCCcgcgaGCgGGCCCggCUGcGGCg -3'
miRNA:   3'- gcGCGCCCGGG-----CGgCCGGGg-GAC-CCG- -5'
23692 5' -70.9 NC_005261.1 + 1065 0.72 0.107538
Target:  5'- gGCGCGGGgg-GCUGGCCCCgCUccaGGGCg -3'
miRNA:   3'- gCGCGCCCgggCGGCCGGGG-GA---CCCG- -5'
23692 5' -70.9 NC_005261.1 + 1166 0.72 0.115512
Target:  5'- aCGCGCGccGGCCCGCgccgCGGCCggggCCgGGGCc -3'
miRNA:   3'- -GCGCGC--CCGGGCG----GCCGGg---GGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 1209 0.66 0.274083
Target:  5'- gGCGCGGaccccccgccgauGCCgccguCGCCGGCCCC--GGGa -3'
miRNA:   3'- gCGCGCC-------------CGG-----GCGGCCGGGGgaCCCg -5'
23692 5' -70.9 NC_005261.1 + 1567 0.66 0.268828
Target:  5'- cCGCaGC-GGCgCGCCGaGCCCCCaGcGGUu -3'
miRNA:   3'- -GCG-CGcCCGgGCGGC-CGGGGGaC-CCG- -5'
23692 5' -70.9 NC_005261.1 + 1743 0.68 0.201741
Target:  5'- uGCGCGGGCCCaggcGCgUGGCCaCCgUGuagcgcacguuGGCg -3'
miRNA:   3'- gCGCGCCCGGG----CG-GCCGG-GGgAC-----------CCG- -5'
23692 5' -70.9 NC_005261.1 + 2278 0.68 0.192813
Target:  5'- uCGC-CGGGCggcgCCGCCaGcGCCuCCCcGGGCa -3'
miRNA:   3'- -GCGcGCCCG----GGCGG-C-CGG-GGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 2390 0.7 0.142853
Target:  5'- gCGCGCuGGcggcgagcgcGCCCGCgGGCCCCgCgcgGcGGCg -3'
miRNA:   3'- -GCGCG-CC----------CGGGCGgCCGGGG-Ga--C-CCG- -5'
23692 5' -70.9 NC_005261.1 + 2563 0.68 0.206338
Target:  5'- gGCGCGGGCgUG-UGGUacuCCCC-GGGCg -3'
miRNA:   3'- gCGCGCCCGgGCgGCCG---GGGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 2649 0.68 0.201286
Target:  5'- gCGgGCGGGCagCGgCGGCUCCCgccgcgcUGGGg -3'
miRNA:   3'- -GCgCGCCCGg-GCgGCCGGGGG-------ACCCg -5'
23692 5' -70.9 NC_005261.1 + 2691 0.7 0.139545
Target:  5'- gGCGCGccggcuuuuGGCCggCGCCGGgCCCCUGGc- -3'
miRNA:   3'- gCGCGC---------CCGG--GCGGCCgGGGGACCcg -5'
23692 5' -70.9 NC_005261.1 + 2761 0.78 0.034893
Target:  5'- uCGCgGCGGGCCUcgagGCCcGCCCCCgagGGGCu -3'
miRNA:   3'- -GCG-CGCCCGGG----CGGcCGGGGGa--CCCG- -5'
23692 5' -70.9 NC_005261.1 + 2807 0.66 0.286666
Target:  5'- cCGgGagGGGCCgGgCGGCCCCagcccgagCUcGGGCg -3'
miRNA:   3'- -GCgCg-CCCGGgCgGCCGGGG--------GA-CCCG- -5'
23692 5' -70.9 NC_005261.1 + 2988 0.66 0.299068
Target:  5'- gGgGCucGGCCUGgCGGCCCggcgCCgGGGCu -3'
miRNA:   3'- gCgCGc-CCGGGCgGCCGGG----GGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 3343 0.74 0.076725
Target:  5'- gCGcCGCGGcGCCCggcgcGCCGGCCUUCaGGGCc -3'
miRNA:   3'- -GC-GCGCC-CGGG-----CGGCCGGGGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 3381 0.69 0.175994
Target:  5'- aGCGCGGccgccaGCCgCGCCGGCacuuCCgCCggcGGGCu -3'
miRNA:   3'- gCGCGCC------CGG-GCGGCCG----GG-GGa--CCCG- -5'
23692 5' -70.9 NC_005261.1 + 3451 0.68 0.201286
Target:  5'- gCGCGCGGGCCgccgCGCCGcgcgucgaguaccGCgCCagcgGGGCc -3'
miRNA:   3'- -GCGCGCCCGG----GCGGC-------------CGgGGga--CCCG- -5'
23692 5' -70.9 NC_005261.1 + 3513 0.66 0.268828
Target:  5'- aGCGCGGccgccuccaGCgCGgCGGCCgCCUcGGCg -3'
miRNA:   3'- gCGCGCC---------CGgGCgGCCGGgGGAcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.