Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23698 | 3' | -59 | NC_005261.1 | + | 29267 | 0.67 | 0.676443 |
Target: 5'- -cGCCgcUGgAGGGCCCgcUGCUGACGc -3' miRNA: 3'- aaCGGaaACgUCCUGGG--GCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 129709 | 0.67 | 0.676443 |
Target: 5'- -gGCCggagGCAGG--CCCGCCGGCu- -3' miRNA: 3'- aaCGGaaa-CGUCCugGGGCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 42112 | 0.67 | 0.676443 |
Target: 5'- gUGCCggcccaGCAGcccGGCCUCGUCGAUGAc -3' miRNA: 3'- aACGGaaa---CGUC---CUGGGGCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 68509 | 0.67 | 0.66629 |
Target: 5'- -cGCUgaUGCAGgcGugCCUGCCGGCGc -3' miRNA: 3'- aaCGGaaACGUC--CugGGGCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 74484 | 0.67 | 0.656109 |
Target: 5'- gUGCCUggGCGGGAUCUCGgCGcucuuCGGg -3' miRNA: 3'- aACGGAaaCGUCCUGGGGCgGCu----GCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 22683 | 0.67 | 0.656109 |
Target: 5'- gUGCCgccGgGGGACgggCCCGgCGACGAg -3' miRNA: 3'- aACGGaaaCgUCCUG---GGGCgGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 1199 | 0.67 | 0.656109 |
Target: 5'- -gGCCgggcgcgGCGcGGAccCCCCGCCGAUGc -3' miRNA: 3'- aaCGGaaa----CGU-CCU--GGGGCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 127727 | 0.67 | 0.645909 |
Target: 5'- cUGCCUgguaGCGGGAgCuuGgCGGCGGg -3' miRNA: 3'- aACGGAaa--CGUCCUgGggCgGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 84283 | 0.67 | 0.645909 |
Target: 5'- gUGCCgccgGCGGccccGGCCCCGgCGGCGc -3' miRNA: 3'- aACGGaaa-CGUC----CUGGGGCgGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 28660 | 0.67 | 0.645909 |
Target: 5'- -gGCCg--GCGGGGCCgaCGaCGACGAg -3' miRNA: 3'- aaCGGaaaCGUCCUGGg-GCgGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 43412 | 0.68 | 0.635698 |
Target: 5'- -cGCCggggGCGGccuCCgCCGCCGGCGGg -3' miRNA: 3'- aaCGGaaa-CGUCcu-GG-GGCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 88338 | 0.68 | 0.635698 |
Target: 5'- -gGCUg--GCGGcGCCCCGCCGccGCGGc -3' miRNA: 3'- aaCGGaaaCGUCcUGGGGCGGC--UGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 62380 | 0.68 | 0.635698 |
Target: 5'- -cGCCUgcgGCAGcGGCaCCGUCGugGGg -3' miRNA: 3'- aaCGGAaa-CGUC-CUGgGGCGGCugCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 118513 | 0.68 | 0.625484 |
Target: 5'- -cGCCgcucgGCgAGGcgcccuGCCCCGCCGACc- -3' miRNA: 3'- aaCGGaaa--CG-UCC------UGGGGCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 109987 | 0.68 | 0.615275 |
Target: 5'- -cGCCccgGCAGGucgucguggacACgCCCGCCGGCGc -3' miRNA: 3'- aaCGGaaaCGUCC-----------UG-GGGCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 81461 | 0.68 | 0.615275 |
Target: 5'- -cGCCagcaGCAGGGCCCaCGCCGcccaGAg -3' miRNA: 3'- aaCGGaaa-CGUCCUGGG-GCGGCug--CU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 67369 | 0.68 | 0.615275 |
Target: 5'- -cGCCg--GCAGcGCCaCCGCCG-CGAa -3' miRNA: 3'- aaCGGaaaCGUCcUGG-GGCGGCuGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 16044 | 0.68 | 0.605079 |
Target: 5'- -cGCCUUcuuggGCAgcGGGCCCgCGCCGAgcCGGc -3' miRNA: 3'- aaCGGAAa----CGU--CCUGGG-GCGGCU--GCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 118021 | 0.68 | 0.605079 |
Target: 5'- cUGUCggacgcacGCGGGGCCCgGCCG-CGAc -3' miRNA: 3'- aACGGaaa-----CGUCCUGGGgCGGCuGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 110986 | 0.68 | 0.605079 |
Target: 5'- -cGCCUUcgUGCgccugGGGACgCUGCCGcACGAc -3' miRNA: 3'- aaCGGAA--ACG-----UCCUGgGGCGGC-UGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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